gentoo/gentoo.git - forked from gentoo/gentoo

	Commit message (Collapse)	Author	Age
*	sci-biology/mosaik: Version bump to 2.2.30	David Seifert	2016-09-04
\| \| \| \| \| \| \| \| \| \|	* EAPI=6 * Make build system verbose * Honour CPPFLAGS and LDFLAGS * Handle LFS properly * Fix -Werror=format-security errors Package-Manager: portage-2.3.0
*	sci-biology/mafft: Version bump to 7.305	David Seifert	2016-09-04
\| \| \| \| \| \|	* EAPI=6 Package-Manager: portage-2.3.0
*	sci-biology/yass: remove deprecated EAPI ebuilds	David Seifert	2016-09-04
\| \| \| \|	Package-Manager: portage-2.3.0
*	sci-biology/yass: Port to EAPI=6	David Seifert	2016-09-04
\| \| \| \|	Package-Manager: portage-2.3.0
*	sci-biology/biopython: Version bump	David Seifert	2016-09-03
\| \| \| \|	Package-Manager: portage-2.3.0
*	sci-biology/bwa: Version bump to 0.7.15	David Seifert	2016-09-03
\| \| \| \|	Package-Manager: portage-2.3.0
*	sci-biology/tophat: Various QA fixes, handle python properly	David Seifert	2016-09-03
\| \| \| \| \| \| \| \| \| \|	* Add subslot operator := for dev-libs/boost * DEPEND on virtual/pkgconfig * Add missing ${PYTHON_REQUIRED_USE} and ${PYTHON_DEPS} * Install python scripts and modules properly using 'python_doscript' and 'python_domodule' Package-Manager: portage-2.3.0
*	sci-biology/allpathslg: Unconditionally require OpenMP support	David Seifert	2016-08-13
\| \| \| \| \| \| \| \| \|	Gentoo-bug: 591166 * The configure script of sci-biology/allpathslg allows for specifying --enable/--disable-openmp, without it actually being optional. Package-Manager: portage-2.3.0
*	sci-biology/finchtv: Cleanup per bug #146900	Pacho Ramos	2016-08-06
\| \| \| \|	Package-Manager: portage-2.3.0
*	sci-biology/fasta: Cleanup per bug #146900	Pacho Ramos	2016-08-06
\| \| \| \|	Package-Manager: portage-2.3.0
*	sci-biology/exonerate: Cleanup per bug #146900	Pacho Ramos	2016-08-06
\| \| \| \|	Package-Manager: portage-2.3.0
*	sci-biology/ApE: Cleanup per bug #146900	Pacho Ramos	2016-08-06
\| \| \| \|	Package-Manager: portage-2.3.0
*	sci-biology/rebase: Version Bump	Justin Lecher	2016-07-31
\| \| \| \| \|	Package-Manager: portage-2.3.0 Signed-off-by: Justin Lecher <jlec@gentoo.org>
*	sci-biology/seaview: version bump	David Seifert	2016-07-31
\| \| \| \| \| \|	* EAPI=6 Package-Manager: portage-2.3.0
*	sci-biology/seqan: version bump	David Seifert	2016-07-30
\| \| \| \|	Package-Manager: portage-2.3.0
*	sci-biology/emboss: add a blocker for games-action/xbomber #589918	Austin English	2016-07-28
\| \| \| \| \| \|	Gentoo-Bug: https://bugs.gentoo.org/589918 Package-Manager: portage-2.3.0
*	sourceforge: switch to https:// URIs	Mike Frysinger	2016-07-27
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*	sci-biology/bioruby: add ruby21	Hans de Graaff	2016-07-22
\| \| \| \|	Package-Manager: portage-2.2.28
*	sci-biology/clustal-omega: Unconditionally prune .la files	David Seifert	2016-07-02
\| \| \| \|	Package-Manager: portage-2.3.0
*	sci-biology/clustal-omega: Version Bump	Justin Lecher	2016-07-02
\| \| \| \| \|	Package-Manager: portage-2.3.0 Signed-off-by: Justin Lecher <jlec@gentoo.org>
*	sci-biology/rebase: Bump to latest version	Justin Lecher	2016-07-02
\| \| \| \| \|	Package-Manager: portage-2.3.0 Signed-off-by: Justin Lecher <jlec@gentoo.org>
*	sci-biology/bowtie: version bump	David Seifert	2016-06-04
\| \| \| \|	Package-Manager: portage-2.3.0_rc1
*	sci-biology/foldingathome: use #!/sbin/openrc-run instead of #!/sbin/runscript	Austin English	2016-05-18
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*	sci-biology/abyss: add missing dev-libs/boost dependency	Sergei Trofimovich	2016-05-15
\| \| \| \|	Package-Manager: portage-2.2.28
*	sci-biology/vienna-rna: Fix QA MissingSlotDep	David Seifert	2016-05-15
\| \| \| \|	Package-Manager: portage-2.2.28
*	sci-biology/vienna-rna: Fix QA MissingSlotDep	David Seifert	2016-05-15
\| \| \| \|	Package-Manager: portage-2.2.28
*	sci-biology/mrbayes: Fix QA MissingSlotDep	David Seifert	2016-05-15
\| \| \| \|	Package-Manager: portage-2.2.28
*	sci-biology/bwa: Version bump	David Seifert	2016-05-08
\| \| \| \|	Package-Manager: portage-2.2.28
*	sci-biology/allpathslg: replace isnan macro with proper std::isnan function	David Seifert	2016-05-05
\| \| \| \| \| \|	Gentoo-Bug: 580086 Package-Manager: portage-2.2.28
*	sci-biology/bioperl: Fix dependency on dev-perl/YAML	Kent Fredric	2016-04-29
\| \| \| \| \|	Package-Manager: portage-2.2.28 RepoMan-Options: --include-arches="alpha amd64 amd64-fbsd arm arm64 hppa ia64 m68k mips nios2 ppc ppc64 riscv s390 sh sparc sparc-fbsd x86 x86-fbsd"
*	sci-biology/emboss: Clean up of files dir	Justin Lecher	2016-04-26
\| \| \| \| \| \| \| \| \|	Move to readme.gentoo-r1.eclass Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=579728 Package-Manager: portage-2.2.28 Signed-off-by: Justin Lecher <jlec@gentoo.org>
*	sci-biology/hmmer: cheamup of 2.3.2 version	Ian Stakenvicius	2016-04-19
\| \| \| \| \| \| \| \| \|	* Bumped EAPI * Merged KEYWORDS between 2.3.2-r1 and 2.3.2-r2 * dropped IUSE="pvm" as package was dropped 5 years ago * fixed metadata.xml to match Package-Manager: portage-2.2.26
*	sci-biology/bioperl: Fix dependency on dev-perl/Set-Scalar	Kent Fredric	2016-04-15
\| \| \| \| \|	Package-Manager: portage-2.2.28 RepoMan-Options: --include-arches="amd64 amd64-fbsd arm arm64 mips nios2 ppc ppc64 riscv s390 sh sparc-fbsd"
*	sci-biology/goby: Clean up old.	Patrice Clement	2016-04-15
\| \| \| \|	Package-Manager: portage-2.2.26
*	sci-biology/goby: Bump fastutil dependency SLOT to 0.	Patrice Clement	2016-04-15
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*	sci-biology/bowtie: Version bump to 2.2.8	David Seifert	2016-04-10
\| \| \| \| \| \|	* EAPI=6 Package-Manager: portage-2.2.28
*	sci-biology/samtools: Remove lua dep, fix perl shebangs	David Seifert	2016-04-10
\| \| \| \|	Package-Manager: portage-2.2.28
*	sci-biology/pysam: Remove old	David Seifert	2016-04-10
\| \| \| \|	Package-Manager: portage-2.2.28
*	sci-biology/pysam: Version bump, add py3 support	David Seifert	2016-04-10
\| \| \| \|	Package-Manager: portage-2.2.28
*	sci-biology/samtools: Remove lua dep, fix perl shebangs	David Seifert	2016-04-09
\| \| \| \|	Package-Manager: portage-2.2.28
*	sci-biology/seqan: Remove old and broken ebuilds	David Seifert	2016-04-09
\| \| \| \|	Package-Manager: portage-2.2.28
*	sci-biology/tophat: Remove old and broken	David Seifert	2016-04-09
\| \| \| \|	Package-Manager: portage-2.2.28
*	sci-biology/tophat: Version bump, use samtools:0.1-legacy	David Seifert	2016-04-09
\| \| \| \| \| \| \| \| \|	Gentoo-Bug: 545154, 546816, 566494, 572054 * EAPI=6 * Unbundle samtools and SeqAn * Fix broken shebangs in python scripts Package-Manager: portage-2.2.28
*	sci-biology/bowtie: unbundle SeqAn, import Debian patches	David Seifert	2016-04-09
\| \| \| \| \| \|	* EAPI=6 Package-Manager: portage-2.2.28
*	sci-biology/seqan: SLOT 1.4 and 2.1, allow for parallel installation	David Seifert	2016-04-09
\| \| \| \| \| \| \|	Gentoo-Bug: 566502 * EAPI=6 Package-Manager: portage-2.2.28
*	sci-biology/readseq: Remove dead package, see bug #550148	James Le Cuirot	2016-04-03
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*	sci-biology/abyss: Remove old	David Seifert	2016-04-03
\| \| \| \|	Package-Manager: portage-2.2.28
*	sci-biology/abyss: Latest ebuild from science-overlay	David Seifert	2016-04-03
\| \| \| \| \| \|	* EAPI=6 Package-Manager: portage-2.2.28
*	sci-biology/cufflinks: Remove old	David Seifert	2016-04-03
\| \| \| \|	Package-Manager: portage-2.2.28
*	sci-biology/cufflinks: Depend only on sci-biology/samtools:0.1-legacy	David Seifert	2016-04-03
\| \| \| \| \| \| \| \| \| \|	Gentoo-Bug: 535716 * EAPI=6 * Updated boost in tree has fixed serialization for boost::shared_ptr * Build system is now orthogonal to sci-biology/samtools:0 and does not block updating to latest samtools Package-Manager: portage-2.2.28