From 8deb276adb49578cf19bce5ef8fe9394aa90db6f Mon Sep 17 00:00:00 2001
From: Justin Lecher <jlec@gentoo.org>
Date: Sun, 13 Dec 2015 10:19:12 +0100
Subject: sci-biology/bamtools: Unbundle dev-libs/jsoncpp

Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=568090

Package-Manager: portage-2.2.26
Signed-off-by: Justin Lecher <jlec@gentoo.org>
---
 sci-biology/bamtools/bamtools-1.0.2-r1.ebuild | 48 +++++++++++++++++++++++++++
 sci-biology/bamtools/bamtools-1.0.2.ebuild    | 33 ------------------
 2 files changed, 48 insertions(+), 33 deletions(-)
 create mode 100644 sci-biology/bamtools/bamtools-1.0.2-r1.ebuild
 delete mode 100644 sci-biology/bamtools/bamtools-1.0.2.ebuild

(limited to 'sci-biology/bamtools')

diff --git a/sci-biology/bamtools/bamtools-1.0.2-r1.ebuild b/sci-biology/bamtools/bamtools-1.0.2-r1.ebuild
new file mode 100644
index 00000000000..dc1b60ba432
--- /dev/null
+++ b/sci-biology/bamtools/bamtools-1.0.2-r1.ebuild
@@ -0,0 +1,48 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit cmake-utils
+
+DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
+HOMEPAGE="https://github.com/pezmaster31/bamtools"
+SRC_URI="mirror://github/pezmaster31/bamtools/"${P}".tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="
+	dev-libs/jsoncpp
+	sys-libs/zlib"
+DEPEND="${RDEPEND}"
+
+src_prepare() {
+	sed \
+		-e '/third_party/d' \
+		-i src/CMakeLists.txt || die
+	rm -r src/third_party || die
+
+	sed \
+		-e 's:json.h:json/json.h:g' \
+		-i src/toolkit/bamtools_filter.cpp || die
+
+	cmake-utils_src_prepare
+}
+
+src_install() {
+	local i
+	for i in bin/bamtools-${PV} lib/libbamtools.so.${PV} lib/libbamtools-utils.so.${PV}; do
+		TMPDIR="$(pwd)" scanelf -Xr $i || die
+	done
+
+	dobin bin/bamtools
+	dolib.so lib/*so*
+	use static-libs && dolib.a lib/*a
+	insinto /usr/include/bamtools
+	doins include/api include/shared
+	dodoc README
+}
diff --git a/sci-biology/bamtools/bamtools-1.0.2.ebuild b/sci-biology/bamtools/bamtools-1.0.2.ebuild
deleted file mode 100644
index 08c40d0705d..00000000000
--- a/sci-biology/bamtools/bamtools-1.0.2.ebuild
+++ /dev/null
@@ -1,33 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=4
-
-inherit cmake-utils
-
-DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
-HOMEPAGE="https://github.com/pezmaster31/bamtools"
-SRC_URI="mirror://github/pezmaster31/bamtools/"${P}".tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND="sys-libs/zlib"
-RDEPEND="${DEPEND}"
-
-src_install() {
-	for i in bin/bamtools-${PV} lib/libbamtools.so.${PV} lib/libbamtools-utils.so.${PV}; do
-		TMPDIR="$(pwd)" scanelf -Xr $i || die
-	done
-
-	dobin bin/bamtools
-	dolib lib/*
-	insinto /usr/include/bamtools/api
-	doins include/api/*
-	insinto /usr/include/bamtools/shared
-	doins include/shared/*
-	dodoc README
-}
-- 
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