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author | David Seifert <soap@gentoo.org> | 2016-09-18 13:26:32 +0200 |
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committer | David Seifert <soap@gentoo.org> | 2016-09-18 13:33:07 +0200 |
commit | 71e6df91447916064f790d4ec80e6a2ddd917ccf (patch) | |
tree | 622312bee0eb957e05a1b5444821932731132bc7 | |
parent | 9f39270bff954737259cc2b52e97e0bde41f7d2b (diff) | |
download | gentoo-71e6df91447916064f790d4ec80e6a2ddd917ccf.tar.gz gentoo-71e6df91447916064f790d4ec80e6a2ddd917ccf.tar.xz |
sci-biology/lagan: Remove old ebuilds
Package-Manager: portage-2.3.0
-rw-r--r-- | sci-biology/lagan/lagan-2.0-r1.ebuild | 50 | ||||
-rw-r--r-- | sci-biology/lagan/lagan-2.0-r2.ebuild | 55 |
2 files changed, 0 insertions, 105 deletions
diff --git a/sci-biology/lagan/lagan-2.0-r1.ebuild b/sci-biology/lagan/lagan-2.0-r1.ebuild deleted file mode 100644 index 63b966e79ef..00000000000 --- a/sci-biology/lagan/lagan-2.0-r1.ebuild +++ /dev/null @@ -1,50 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI="2" - -inherit eutils - -MY_P="lagan20" - -DESCRIPTION="LAGAN, Multi-LAGAN, Shuffle-LAGAN, Supermap: Whole-genome multiple alignment of genomic DNA" -HOMEPAGE="http://lagan.stanford.edu/lagan_web/index.shtml" -SRC_URI="http://lagan.stanford.edu/lagan_web/${MY_P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -IUSE="" -KEYWORDS="~amd64 ~x86" - -DEPEND="" -RDEPEND="" - -S="${WORKDIR}/${MY_P}" - -src_prepare() { - sed -i "/use Getopt::Long;/ i use lib \"/usr/share/${PN}/lib\";" "${S}/supermap.pl" || die - # NB: Testing with glibc-2.10 has uncovered a bug in src/utils/Sequence.h where libc getline is erroneously used instead of own getline - sed -i 's/getline/my_getline/' "${S}"/src/{anchors.c,glocal/io.cpp} || die - epatch "${FILESDIR}"/${P}-*.patch -} - -src_install() { - dobin lagan.pl slagan.pl mlagan - rm lagan.pl slagan.pl utils/Utils.pm - dodir /usr/share/${PN}/lib - insinto /usr/share/${PN}/lib - doins Utils.pm - exeinto /usr/share/${PN}/utils - doexe utils/* - exeinto /usr/share/${PN} - doexe *.pl anchors chaos glocal order prolagan - insinto /usr/share/${PN} - doins *.txt - dosym /usr/share/${PN}/supermap.pl /usr/bin/supermap - dosym /usr/bin/lagan.pl /usr/bin/lagan - dosym /usr/bin/slagan.pl /usr/bin/slagan - echo "LAGAN_DIR=\"/usr/share/${PN}\"" > ${S}/99${PN} - doenvd "${S}/99${PN}" - dodoc Readmes/README.* -} diff --git a/sci-biology/lagan/lagan-2.0-r2.ebuild b/sci-biology/lagan/lagan-2.0-r2.ebuild deleted file mode 100644 index a37a3736de0..00000000000 --- a/sci-biology/lagan/lagan-2.0-r2.ebuild +++ /dev/null @@ -1,55 +0,0 @@ -# Copyright 1999-2010 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI="2" - -inherit eutils multilib toolchain-funcs - -MY_P="lagan20" - -DESCRIPTION="LAGAN, Multi-LAGAN, Shuffle-LAGAN, Supermap: Whole-genome multiple alignment of genomic DNA" -HOMEPAGE="http://lagan.stanford.edu/lagan_web/index.shtml" -SRC_URI="http://lagan.stanford.edu/lagan_web/${MY_P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -IUSE="" -KEYWORDS="~amd64 ~x86" - -S="${WORKDIR}/${MY_P}" - -src_prepare() { - sed -i "/use Getopt::Long;/ i use lib \"/usr/$(get_libdir)/${PN}/lib\";" "${S}/supermap.pl" || die - # NB: Testing with glibc-2.10 has uncovered a bug in src/utils/Sequence.h where libc getline is erroneously used instead of own getline - sed -i 's/getline/my_getline/' "${S}"/src/{anchors.c,glocal/io.cpp} || die - epatch "${FILESDIR}"/${P}-*.patch -} - -src_compile() { - emake \ - CC=$(tc-getCC) \ - CXX=$(tc-getCXX) \ - CXXFLAGS="${CXXFLAGS}" \ - CFLAGS="${CFLAGS}" -} - -src_install() { - newbin lagan.pl lagan || die - newbin slagan.pl slagan || die - dobin mlagan || die - rm lagan.pl slagan.pl utils/Utils.pm - - insinto /usr/$(get_libdir)/${PN}/lib - doins Utils.pm || die - exeinto /usr/$(get_libdir)/${PN}/utils - doexe utils/* || die - exeinto /usr/$(get_libdir)/${PN} - doexe *.pl anchors chaos glocal order prolagan || die - insinto /usr/$(get_libdir)/${PN} - doins *.txt || die - dosym /usr/$(get_libdir)/${PN}/supermap.pl /usr/bin/supermap - echo "LAGAN_DIR=\"/usr/$(get_libdir)/${PN}\"" > ${S}/99${PN} - doenvd "${S}/99${PN}" || die - dodoc Readmes/README.* || die -} |