sci-libs/hdf: Version bump

Package-Manager: portage-2.2.27

5 files changed, 249 insertions, 0 deletions

diff --git a/sci-libs/hdf/Manifest b/sci-libs/hdf/Manifest
index f1ec6cf57c4..34e6461a569 100644
--- a/sci-libs/hdf/Manifest
+++ b/sci-libs/hdf/Manifest
@@ -1,2 +1,3 @@
+DIST hdf-4.2.11.tar.bz2 3173535 SHA256 bb0e900b8cc6bc89a5730abc97e654e7705e8e1fbc4e0d4477f417822428d99b SHA512 b3be9a91c62fa258c8aa6f97d1ccbd8301225e43938b525a826c639fd8b30b7dd566f58f4d54e365606d861ad01660887163e5ca6521293791080e5ed41ef781 WHIRLPOOL 6168284c0f4cb272cfa14f12779ca2106d86d68d38d85f58ba73c137611acde6ed3d1c32bd5620496b20578de7decae6428654eb6a3afffbf7c11fff1ccebc20
 DIST hdf-4.2.8.tar.bz2 3027253 SHA256 e8a94ae2c838007ccdd55bb3cd9684adba3ded367c09803ffc84a2704f83c00f SHA512 d033007eff74d957572db8433f66e9df6fec44f67b28ddbad6e9a2d832b5504a29e9ecc5565d861b8308bab8d0dbfce19ae1e2ade0dd758d370a333819364c8e WHIRLPOOL 89ac6a092024fe2fac61bff918c14bf90e80db0b77f48e2ffe7cbf05610a3687e214c684f49e909b985c09b6baacf3dc730a15141fb44a3d59c191777c538299
 DIST hdf-4.2.9.tar.bz2 3126686 SHA256 942a54bff4da8c0733c5626b5e11162deda1adeb65c384b141f0681c935ca98a SHA512 99630177167f115f4a7f4424cf3fc77962c4eb46698f884d0e89acfe7d585aa659fd7cdf36a29246ae518675b07182223d4337a7d0aac6344ce21ccbed9aa390 WHIRLPOOL 0ed161fba7f862c1d93aebbcb6184c0b256ce71be12fa49598f9c8bf727ea1ef46c612c41908a49774b7982f5dfe577bcb8ada2c26bf2488627952040bdd9934
diff --git a/sci-libs/hdf/files/hdf-4.2.11-enable-fortran-shared.patch b/sci-libs/hdf/files/hdf-4.2.11-enable-fortran-shared.patch
new file mode 100644
index 00000000000..7d48a8a0ca9
--- /dev/null
+++ b/sci-libs/hdf/files/hdf-4.2.11-enable-fortran-shared.patch
@@ -0,0 +1,35 @@
+--- hdf-4.2.11.orig/configure.ac	2016-03-16 20:07:45.093493050 +0000
++++ hdf-4.2.11/configure.ac	2016-03-16 20:15:56.767311873 +0000
+@@ -224,20 +224,6 @@
+ ## Build static libraries by default. Furthermore, fortran shared libraries
+ ## are unsupported. Disallow a user from enabling both shared libraries and
+ ## fortran.
+-if test "X${enable_shared}" != "Xyes"; then
+-    enable_shared="no"
+-fi
+-
+-if test "X${enable_shared}" = "Xyes"; then
+-    if test "X${BUILD_FORTRAN}" = "Xyes"; then
+-        AC_MSG_ERROR([Cannot build shared fortran libraries. Please configure with --disable-fortran flag.])
+-    fi
+-fi
+-
+-AC_PROG_INSTALL
+-AC_PROG_LN_S
+-
+-AC_CHECK_PROGS([AR], [ar xar], [:], [$PATH])
+ 
+ AC_CHECK_PROGS([YACC], ['bison -y' byacc yacc], [none], [])
+ 
+@@ -847,11 +833,6 @@
+ ## ------------------------------------------------------------------------
+ ## Check to see if libtool has enabled shared libraries. Set a conditional
+ ## as some Makefiles will build based on availability of shared libraries.
+-if (./libtool --features | grep '^enable shared libraries' > /dev/null); then
+-  enable_shared=yes
+-else
+-  enable_shared=no
+-fi
+ 
+ ## ------------------------------------------------------------------------
+ ## Specify shared library extension the host machine should recognize.
diff --git a/sci-libs/hdf/files/hdf-4.2.11-fix-examples-dir.patch b/sci-libs/hdf/files/hdf-4.2.11-fix-examples-dir.patch
new file mode 100644
index 00000000000..f6f15545d66
--- /dev/null
+++ b/sci-libs/hdf/files/hdf-4.2.11-fix-examples-dir.patch
@@ -0,0 +1,120 @@
+diff -Nur hdf-4.2.11.orig/hdf/examples/Makefile.am hdf-4.2.11/hdf/examples/Makefile.am
+--- hdf-4.2.11.orig/hdf/examples/Makefile.am	2016-03-16 20:07:45.103492925 +0000
++++ hdf-4.2.11/hdf/examples/Makefile.am	2016-03-16 22:16:35.836304451 +0000
+@@ -46,8 +46,8 @@
+ INSTALL_TOP_FILES = README
+ 
+ # Where to install example files
+-EXAMPLEDIR=$(prefix)/examples/c
+-EXAMPLETOPDIR=$(prefix)/examples
++EXAMPLEDIR=$(docdir)/examples/c
++EXAMPLETOPDIR=$(docdir)/examples
+ 
+ # How to build C programs using h4cc
+ $(EXTRA_PROG): $(H4CC)
+diff -Nur hdf-4.2.11.orig/hdf/fortran/examples/Makefile.am hdf-4.2.11/hdf/fortran/examples/Makefile.am
+--- hdf-4.2.11.orig/hdf/fortran/examples/Makefile.am	2016-03-16 20:07:45.103492925 +0000
++++ hdf-4.2.11/hdf/fortran/examples/Makefile.am	2016-03-16 22:17:58.775261767 +0000
+@@ -41,7 +41,7 @@
+ INSTALL_SCRIPT_FILES = run-fortran-ex.sh
+ 
+ # Where to install Fortran example files
+-EXAMPLEDIR=$(prefix)/examples/fortran
++EXAMPLEDIR=$(docdir)/examples/fortran
+ 
+ # How to build Fortran programs using h4fc
+ $(EXTRA_PROG): $(H4FC)
+diff -Nur hdf-4.2.11.orig/mfhdf/examples/Makefile.am hdf-4.2.11/mfhdf/examples/Makefile.am
+--- hdf-4.2.11.orig/mfhdf/examples/Makefile.am	2016-03-16 20:07:45.183491919 +0000
++++ hdf-4.2.11/mfhdf/examples/Makefile.am	2016-03-16 22:18:38.304764814 +0000
+@@ -23,7 +23,7 @@
+ 	SD_get_info.c SD_find_sds_by_name.c SD_set_get_dim_info.c        \
+ 	SD_dimscale_vs_sds.c SD_set_attr.c SD_get_attr.c SD_chunking_example.c
+ 
+-EXAMPLEDIR=$(prefix)/examples/c
++EXAMPLEDIR=$(docdir)/examples/c
+ 
+ # How to build programs using h4cc
+ $(EXTRA_PROG): $(H4CC)
+diff -Nur hdf-4.2.11.orig/mfhdf/fortran/examples/Makefile.am hdf-4.2.11/mfhdf/fortran/examples/Makefile.am
+--- hdf-4.2.11.orig/mfhdf/fortran/examples/Makefile.am	2016-03-16 20:07:45.183491919 +0000
++++ hdf-4.2.11/mfhdf/fortran/examples/Makefile.am	2016-03-16 22:18:15.075056851 +0000
+@@ -24,7 +24,7 @@
+ 	SD_set_attr.f SD_get_attr.f SD_compress_sds.f SD_chunking_example.f
+ 
+ # Where to install example files
+-EXAMPLEDIR=$(prefix)/examples/fortran
++EXAMPLEDIR=$(docdir)/examples/fortran
+ 
+ # How to build Fortran programs using h4fc
+ $(EXTRA_PROG): $(H4FC)
+diff -up hdf-4.2.11/config/examples.am.destdir hdf-4.2.11/config/examples.am
+--- hdf-4.2.11/config/examples.am.destdir	2015-02-09 09:43:05.000000000 -0700
++++ hdf-4.2.11/config/examples.am	2015-02-13 13:24:09.008230956 -0700
+@@ -44,7 +44,7 @@ CHECK_CLEANFILES+= *.hdf
+ CLEANFILES=$(EXAMPLE_PROG)
+ 
+ # How to create EXAMPLEDIR if it doesn't already exist
+-$(EXAMPLEDIR):
++$(DESTDIR)$(EXAMPLEDIR):
+ 	mkdir -p $@
+ 
+ # Install and uninstall rules.  We install the source files, not the
+@@ -54,42 +54,42 @@ install-data-local:
+ uninstall-local:
+ 	@$(MAKE) $(AM_MAKEFLAGS) uninstall-examples
+ 
+-install-examples: $(EXAMPLEDIR) 
++install-examples: $(DESTDIR)$(EXAMPLEDIR) 
+ 	@for f in X $(INSTALL_FILES); do                                     \
+ 	  if test $$f != X; then                                             \
+-	    (set -x; $(INSTALL) $(srcdir)/$$f $(EXAMPLEDIR)/. || exit 1);    \
+-	    chmod a-x $(EXAMPLEDIR)/$$f;                                     \
++	    (set -x; $(INSTALL) $(srcdir)/$$f $(DESTDIR)$(EXAMPLEDIR)/. || exit 1);    \
++	    chmod a-x $(DESTDIR)$(EXAMPLEDIR)/$$f;                                     \
+ 	  fi;                                                                \
+ 	done
+ 	@for f in X $(INSTALL_SCRIPT_FILES); do                              \
+ 	  if test $$f != X; then                                             \
+-	    (set -x; $(INSTALL) $(srcdir)/$$f $(EXAMPLEDIR)/. || exit 1);    \
++	    (set -x; $(INSTALL) $(srcdir)/$$f $(DESTDIR)$(EXAMPLEDIR)/. || exit 1);    \
+ 	  fi;                                                                \
+ 	done
+ 	@for f in X $(INSTALL_TOP_FILES); do                                 \
+ 	  if test $$f != X; then                                             \
+-	    (set -x; $(INSTALL) $(srcdir)/$$f $(EXAMPLETOPDIR)/. || exit 1); \
+-	    chmod a-x $(EXAMPLETOPDIR)/$$f;                                  \
++	    (set -x; $(INSTALL) $(srcdir)/$$f $(DESTDIR)$(EXAMPLETOPDIR)/. || exit 1); \
++	    chmod a-x $(DESTDIR)$(EXAMPLETOPDIR)/$$f;                                  \
+ 	  fi;                                                                \
+ 	done
+ 	@for f in X $(INSTALL_TOP_SCRIPT_FILES); do                          \
+ 	  if test $$f != X; then                                             \
+-	    (set -x; $(INSTALL) $(srcdir)/$$f $(EXAMPLETOPDIR)/. || exit 1); \
++	    (set -x; $(INSTALL) $(srcdir)/$$f $(DESTDIR)$(EXAMPLETOPDIR)/. || exit 1); \
+ 	  fi;                                                                \
+ 	done
+ 
+ uninstall-examples:
+-	@if test -n "$(INSTALL_FILES)" -a -d $(EXAMPLEDIR); then           \
+-	  set -x; cd $(EXAMPLEDIR) && $(RM) $(INSTALL_FILES);              \
++	@if test -n "$(INSTALL_FILES)" -a -d $(DESTDIR)$(EXAMPLEDIR); then           \
++	  set -x; cd $(DESTDIR)$(EXAMPLEDIR) && $(RM) $(INSTALL_FILES);              \
+ 	fi
+-	@if test -n "$(INSTALL_SCRIPT_FILES)" -a -d $(EXAMPLEDIR); then    \
+-	  set -x; cd $(EXAMPLEDIR) && $(RM) $(INSTALL_SCRIPT_FILES);       \
++	@if test -n "$(INSTALL_SCRIPT_FILES)" -a -d $(DESTDIR)$(EXAMPLEDIR); then    \
++	  set -x; cd $(DESTDIR)$(EXAMPLEDIR) && $(RM) $(INSTALL_SCRIPT_FILES);       \
+ 	fi
+-	@if test -n "$(INSTALL_TOP_FILES)" -a -d $(EXAMPLETOPDIR); then    \
+-	  set -x; cd $(EXAMPLETOPDIR) && $(RM) $(INSTALL_TOP_FILES);       \
++	@if test -n "$(INSTALL_TOP_FILES)" -a -d $(DESTDIR)$(EXAMPLETOPDIR); then    \
++	  set -x; cd $$(DESTDIR)(EXAMPLETOPDIR) && $(RM) $(INSTALL_TOP_FILES);       \
+ 	fi
+-	@if test -n "$(INSTALL_TOP_SCRIPT_FILES)" -a -d $(EXAMPLETOPDIR); then    \
+-	  set -x; cd $(EXAMPLETOPDIR) && $(RM) $(INSTALL_TOP_SCRIPT_FILES);       \
++	@if test -n "$(INSTALL_TOP_SCRIPT_FILES)" -a -d $(DESTDIR)$(EXAMPLETOPDIR); then    \
++	  set -x; cd $(DESTDIR)$(EXAMPLETOPDIR) && $(RM) $(INSTALL_TOP_SCRIPT_FILES);       \
+ 	fi
+ 
+ installcheck-local:
diff --git a/sci-libs/hdf/files/hdf-4.2.11-fix-szip-detection.patch b/sci-libs/hdf/files/hdf-4.2.11-fix-szip-detection.patch
new file mode 100644
index 00000000000..4486eb959b8
--- /dev/null
+++ b/sci-libs/hdf/files/hdf-4.2.11-fix-szip-detection.patch
@@ -0,0 +1,27 @@
+--- hdf-4.2.11.orig/configure.ac	2016-03-16 20:07:45.093493050 +0000
++++ hdf-4.2.11/configure.ac	2016-03-16 22:08:06.232711036 +0000
+@@ -473,12 +473,14 @@
+   yes)
+     HAVE_SZIP="yes"
+     AC_CHECK_HEADERS([szlib.h], [HAVE_SZLIB_H="yes"], [unset HAVE_SZIP])
+-    if test "x$HAVE_SZLIB" = "xyes" -a "x$HAVE_SZLIB_H" = "xyes"; then
++    if test "x$HAVE_SZIP" = "xyes" -a "x$HAVE_SZLIB_H" = "xyes"; then
+       AC_CHECK_LIB([sz], [SZ_BufftoBuffCompress],, [unset HAVE_SZIP])
+     fi
+ 
+     if test -z "$HAVE_SZIP"; then
+       AC_MSG_ERROR([couldn't find szlib library])
++    else
++      USE_COMP_SZIP="yes"
+     fi
+     ;;
+   no)
+@@ -525,7 +527,7 @@
+       AC_CHECK_LIB([sz], [SZ_BufftoBuffCompress],, [unset HAVE_SZIP])
+     fi
+ 
+-    if test -z "$HAVE_SZIP"; then
++    if test  "x$HAVE_SZIP" != "xyes"; then
+       AC_MSG_ERROR([couldn't find szlib library])
+     else
+       USE_COMP_SZIP="yes"
diff --git a/sci-libs/hdf/hdf-4.2.11.ebuild b/sci-libs/hdf/hdf-4.2.11.ebuild
new file mode 100644
index 00000000000..d12e40d9b69
--- /dev/null
+++ b/sci-libs/hdf/hdf-4.2.11.ebuild
@@ -0,0 +1,66 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+FORTRAN_NEEDED=fortran
+
+inherit fortran-2 toolchain-funcs autotools flag-o-matic
+
+MYP=${P/_p/-patch}
+
+DESCRIPTION="General purpose library and format for storing scientific data"
+HOMEPAGE="http://www.hdfgroup.org/hdf4.html"
+SRC_URI="http://www.hdfgroup.org/ftp/HDF/HDF_Current/src/${MYP}.tar.bz2"
+
+SLOT="0"
+LICENSE="NCSA-HDF"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples fortran szip static-libs test"
+REQUIRED_USE="test? ( szip )"
+
+RDEPEND="
+	sys-libs/zlib
+	virtual/jpeg:0
+	szip? ( virtual/szip )"
+DEPEND="${RDEPEND}
+	test? ( virtual/szip )"
+
+S="${WORKDIR}/${MYP}"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-4.2.11-fix-szip-detection.patch
+	"${FILESDIR}"/${PN}-4.2.11-enable-fortran-shared.patch
+	"${FILESDIR}"/${PN}-4.2.11-fix-examples-dir.patch
+)
+
+src_prepare() {
+	default
+	sed -i -e 's/-R/-L/g' config/commence.am || die #rpath
+	eautoreconf
+	[[ $(tc-getFC) = *gfortran ]] && append-fflags -fno-range-check
+}
+
+src_configure() {
+	econf \
+		--enable-shared \
+		--enable-production=gentoo \
+		--disable-netcdf \
+		$(use_enable fortran) \
+		$(use_enable static-libs static) \
+		$(use_with szip szlib) \
+		CC="$(tc-getCC)"
+}
+
+src_install() {
+	default
+	use static-libs || prune_libtool_files --all
+	dodoc release_notes/{RELEASE,HISTORY,bugs_fixed,misc_docs}.txt
+	cd "${ED}"usr
+	use examples || rm -rf share/doc/${PF}/examples
+	mv bin/ncgen{,-hdf} || die
+	mv bin/ncdump{,-hdf} || die
+	mv share/man/man1/ncgen{,-hdf}.1 || die
+	mv share/man/man1/ncdump{,-hdf}.1 || die
+}