proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

4 files changed, 168 insertions, 0 deletions

diff --git a/dev-perl/Bio-Graphics/Bio-Graphics-2.370.0-r1.ebuild b/dev-perl/Bio-Graphics/Bio-Graphics-2.370.0-r1.ebuild
new file mode 100644
index 00000000000..7f9a4a3c999
--- /dev/null
+++ b/dev-perl/Bio-Graphics/Bio-Graphics-2.370.0-r1.ebuild
@@ -0,0 +1,22 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+MODULE_AUTHOR=LDS
+MODULE_VERSION=2.37
+inherit perl-module
+
+DESCRIPTION="Generate images from Bio::Seq objects for visualization purposes"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="dev-perl/GD
+	dev-perl/Statistics-Descriptive"
+DEPEND="${RDEPEND}
+	dev-perl/Module-Build"
+
+SRC_TEST=no
diff --git a/dev-perl/Bio-Graphics/Bio-Graphics-2.390.0.ebuild b/dev-perl/Bio-Graphics/Bio-Graphics-2.390.0.ebuild
new file mode 100644
index 00000000000..44dfa5fe957
--- /dev/null
+++ b/dev-perl/Bio-Graphics/Bio-Graphics-2.390.0.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+MODULE_AUTHOR=LDS
+MODULE_VERSION=2.39
+inherit perl-module
+
+DESCRIPTION="Generate images from Bio::Seq objects for visualization purposes"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="
+	>=dev-perl/GD-2.300.0
+	>=dev-perl/Statistics-Descriptive-2.600.0
+	>=sci-biology/bioperl-1.5.9.1
+
+"
+DEPEND="${RDEPEND}
+	>=dev-perl/Module-Build-0.420.0
+"
+
+SRC_TEST=do
diff --git a/dev-perl/Bio-Graphics/Manifest b/dev-perl/Bio-Graphics/Manifest
new file mode 100644
index 00000000000..d2bd441d724
--- /dev/null
+++ b/dev-perl/Bio-Graphics/Manifest
@@ -0,0 +1,2 @@
+DIST Bio-Graphics-2.37.tar.gz 1081671 SHA256 d85716b3e773cc899b9cb5733203fa0fbb4ce7b1ac3ae36fef1bbb9000968c0f SHA512 f8858f018ece0cf174d6803f0fe1110099ba5b2b6f0a1452db361949320aeccb7738f588fe2ac5c642d2b9b5e449a0c7822c0da1ceda91e5f1ffbac07ce3fcbe WHIRLPOOL 4dda3d65472c5863820a88082daf5da05624067f4c518cf53918574c88c89e0610df94f33d1db004542290a1bedaa78ef4159c6810e6de9c4401bdecfafd7ca8
+DIST Bio-Graphics-2.39.tar.gz 1139511 SHA256 5602e56c469fba8be024d72bff7ec1502392d82ac0fde4d1399e02488d6bfd85 SHA512 4119c56a125df67a613833c06d7db94be7f19c39fcf908eb52c403e70652c04d91a3b7de768e2465423bff69dd900cb45f1044ed673eb6228a8ad7516a35471f WHIRLPOOL 30877d7f6c264b833ebcf69dfebc037fdaff66200a80cd7b9bf964b2f435d6d23db7a8f1228c010675955b7528f95fb1d9a018c48fa8a5456e4813d10d7ce76f
diff --git a/dev-perl/Bio-Graphics/metadata.xml b/dev-perl/Bio-Graphics/metadata.xml
new file mode 100644
index 00000000000..8567b6c7375
--- /dev/null
+++ b/dev-perl/Bio-Graphics/metadata.xml
@@ -0,0 +1,117 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci</herd>
+  <herd>perl</herd>
+  <upstream>
+    <remote-id type="cpan">Bio-Graphics</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::ConfiguratorI</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::DrawTransmembrane</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Feature</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::FeatureBase</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::FeatureDir</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::FeatureFile</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::FeatureFile::Iterator</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::FileSplitter</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::Factory</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::alignment</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::allele_tower</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::anchored_arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::box</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::broken_line</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::cds</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::christmas_arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::cross</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::crossbox</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::dashed_line</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::diamond</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::dna</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::dot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::dumbbell</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ellipse</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ex</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::extending_arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::fb_shmiggle</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::fixedwidth</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::flag</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::gene</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::generic</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::graded_segments</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::group</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::hat</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::heat_map</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::heat_map_ideogram</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::heterogeneous_segments</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::hidden</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::hybrid_plot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ideogram</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::image</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::lightning</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::line</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::merge_parts</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::merged_alignment</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::minmax</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::operon</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::oval</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::pairplot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::pentagram</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::phylo_align</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::pinsertion</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::point_glyph</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::primers</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::processed_transcript</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::protein</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ragged_ends</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::rainbow_gene</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::read_pair</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::redgreen_box</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::redgreen_segment</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::repeating_shape</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::rndrect</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ruler_arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::saw_teeth</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::scale</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::segmented_keyglyph</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::segments</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::smoothing</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::so_transcript</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::span</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::spectrogram</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::splice_site</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::stackedplot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ternary_plot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::text_in_box</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::three_letters</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::tic_tac_toe</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::toomany</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::trace</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::track</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::transcript</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::transcript2</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::translation</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::triangle</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::two_bolts</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::vista_plot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wave</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::weighted_arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::whiskerplot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wiggle_box</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wiggle_data</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wiggle_density</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wiggle_whiskers</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wiggle_xyplot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::xyplot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Layout</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Layout::Contour</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Math</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Panel</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Pictogram</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::RendererI</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Util</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Wiggle</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Wiggle::Loader</remote-id>
+  </upstream>
+</pkgmetadata>