proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

5 files changed, 390 insertions, 0 deletions

diff --git a/dev-python/numpy/files/numpy-1.8.0-f2py-insecure-temporary.patch b/dev-python/numpy/files/numpy-1.8.0-f2py-insecure-temporary.patch
new file mode 100644
index 00000000000..5a68e8e2aa9
--- /dev/null
+++ b/dev-python/numpy/files/numpy-1.8.0-f2py-insecure-temporary.patch
@@ -0,0 +1,214 @@
+ numpy/core/tests/test_memmap.py     | 34 ++++++++++++++++------------------
+ numpy/core/tests/test_multiarray.py |  9 +++------
+ numpy/f2py/__init__.py              | 22 +++++++++++-----------
+ numpy/f2py/f2py2e.py                |  4 ++--
+ numpy/lib/tests/test_io.py          | 24 ++++++++++++++++--------
+ 5 files changed, 48 insertions(+), 45 deletions(-)
+
+diff --git a/numpy/core/tests/test_memmap.py b/numpy/core/tests/test_memmap.py
+index 6de6319..10e7a08 100644
+--- a/numpy/core/tests/test_memmap.py
++++ b/numpy/core/tests/test_memmap.py
+@@ -1,7 +1,7 @@
+ from __future__ import division, absolute_import, print_function
+ 
+ import sys
+-from tempfile import NamedTemporaryFile, TemporaryFile, mktemp
++from tempfile import NamedTemporaryFile, TemporaryFile
+ import os
+ 
+ from numpy import memmap
+@@ -33,12 +33,11 @@ class TestMemmap(TestCase):
+         assert_array_equal(self.data, newfp)
+ 
+     def test_open_with_filename(self):
+-        tmpname = mktemp('', 'mmap')
+-        fp = memmap(tmpname, dtype=self.dtype, mode='w+',
+-                       shape=self.shape)
+-        fp[:] = self.data[:]
+-        del fp
+-        os.unlink(tmpname)
++        with NamedTemporaryFile() as tmp:
++            fp = memmap(tmp.name, dtype=self.dtype, mode='w+',
++                        shape=self.shape)
++            fp[:] = self.data[:]
++            del fp
+ 
+     def test_unnamed_file(self):
+         with TemporaryFile() as f:
+@@ -55,17 +54,16 @@ class TestMemmap(TestCase):
+         del fp
+ 
+     def test_filename(self):
+-        tmpname = mktemp('', 'mmap')
+-        fp = memmap(tmpname, dtype=self.dtype, mode='w+',
+-                       shape=self.shape)
+-        abspath = os.path.abspath(tmpname)
+-        fp[:] = self.data[:]
+-        self.assertEqual(abspath, fp.filename)
+-        b = fp[:1]
+-        self.assertEqual(abspath, b.filename)
+-        del b
+-        del fp
+-        os.unlink(tmpname)
++        with NamedTemporaryFile() as tmp:
++            fp = memmap(tmp.name, dtype=self.dtype, mode='w+',
++                        shape=self.shape)
++            abspath = os.path.abspath(tmp.name)
++            fp[:] = self.data[:]
++            self.assertEqual(abspath, fp.filename)
++            b = fp[:1]
++            self.assertEqual(abspath, b.filename)
++            del b
++            del fp
+ 
+     def test_filename_fileobj(self):
+         fp = memmap(self.tmpfp, dtype=self.dtype, mode="w+",
+diff --git a/numpy/core/tests/test_multiarray.py b/numpy/core/tests/test_multiarray.py
+index a0c4bcf..37b9931 100644
+--- a/numpy/core/tests/test_multiarray.py
++++ b/numpy/core/tests/test_multiarray.py
+@@ -2051,12 +2051,11 @@ class TestIO(object):
+         self.x = rand(shape) + rand(shape).astype(np.complex)*1j
+         self.x[0,:, 1] = [nan, inf, -inf, nan]
+         self.dtype = self.x.dtype
+-        self.filename = tempfile.mktemp()
++        self.file = tempfile.NamedTemporaryFile()
++        self.filename = self.file.name
+ 
+     def tearDown(self):
+-        if os.path.isfile(self.filename):
+-            os.unlink(self.filename)
+-            #tmp_file.close()
++        self.file.close()
+ 
+     def test_bool_fromstring(self):
+         v = np.array([True, False, True, False], dtype=np.bool_)
+@@ -2084,7 +2083,6 @@ class TestIO(object):
+         y = np.fromfile(f, dtype=self.dtype)
+         f.close()
+         assert_array_equal(y, self.x.flat)
+-        os.unlink(self.filename)
+ 
+     def test_roundtrip_filename(self):
+         self.x.tofile(self.filename)
+@@ -2217,7 +2215,6 @@ class TestIO(object):
+         s = f.read()
+         f.close()
+         assert_equal(s, '1.51,2.0,3.51,4.0')
+-        os.unlink(self.filename)
+ 
+     def test_tofile_format(self):
+         x = np.array([1.51, 2, 3.51, 4], dtype=float)
+diff --git a/numpy/f2py/__init__.py b/numpy/f2py/__init__.py
+index ccdbd4e..fcfd185 100644
+--- a/numpy/f2py/__init__.py
++++ b/numpy/f2py/__init__.py
+@@ -28,20 +28,20 @@ def compile(source,
+     from numpy.distutils.exec_command import exec_command
+     import tempfile
+     if source_fn is None:
+-        fname = os.path.join(tempfile.mktemp()+'.f')
++        f = tempfile.NamedTemporaryFile(suffix='.f')
+     else:
+-        fname = source_fn
+-
+-    f = open(fname, 'w')
+-    f.write(source)
+-    f.close()
+-
+-    args = ' -c -m %s %s %s'%(modulename, fname, extra_args)
+-    c = '%s -c "import numpy.f2py as f2py2e;f2py2e.main()" %s' %(sys.executable, args)
+-    s, o = exec_command(c)
+-    if source_fn is None:
+-        try: os.remove(fname)
+-        except OSError: pass
++        f = open(source_fn, 'w')
++
++    try:
++        f.write(source)
++        f.flush()
++
++        args = ' -c -m %s %s %s'%(modulename, f.name, extra_args)
++        c = '%s -c "import numpy.f2py as f2py2e;f2py2e.main()" %s' % \
++                (sys.executable, args)
++        s, o = exec_command(c)
++    finally:
++        f.close()
+     return s
+ 
+ from numpy.testing import Tester
+diff --git a/numpy/f2py/f2py2e.py b/numpy/f2py/f2py2e.py
+old mode 100755
+new mode 100644
+index 011b430..b264ea3
+--- a/numpy/f2py/f2py2e.py
++++ b/numpy/f2py/f2py2e.py
+@@ -91,7 +91,7 @@ Options:
+                    --lower is assumed with -h key, and --no-lower without -h key.
+ 
+   --build-dir <dirname>  All f2py generated files are created in <dirname>.
+-                   Default is tempfile.mktemp().
++                   Default is tempfile.mkdtemp().
+ 
+   --overwrite-signature  Overwrite existing signature file.
+ 
+@@ -428,7 +428,7 @@ def run_compile():
+         del sys.argv[i]
+     else:
+         remove_build_dir = 1
+-        build_dir = os.path.join(tempfile.mktemp())
++        build_dir = tempfile.mkdtemp()
+ 
+     _reg1 = re.compile(r'[-][-]link[-]')
+     sysinfo_flags = [_m for _m in sys.argv[1:] if _reg1.match(_m)]
+diff --git a/numpy/lib/tests/test_io.py b/numpy/lib/tests/test_io.py
+index fdd78b2..caffada 100644
+--- a/numpy/lib/tests/test_io.py
++++ b/numpy/lib/tests/test_io.py
+@@ -4,7 +4,9 @@ import sys
+ import gzip
+ import os
+ import threading
+-from tempfile import mkstemp, mktemp, NamedTemporaryFile
++import shutil
++import contextlib
++from tempfile import mkstemp, mkdtemp, NamedTemporaryFile
+ import time
+ import warnings
+ import gc
+@@ -21,6 +23,12 @@ from numpy.ma.testutils import (TestCase, assert_equal, assert_array_equal,
+     assert_raises, run_module_suite)
+ from numpy.testing import assert_warns, assert_, build_err_msg
+ 
++@contextlib.contextmanager
++def tempdir(change_dir=False):
++    tmpdir = mkdtemp()
++    yield tmpdir
++    shutil.rmtree(tmpdir)
++
+ 
+ class TextIO(BytesIO):
+     """Helper IO class.
+@@ -145,14 +153,14 @@ class TestSavezLoad(RoundtripTest, TestCase):
+     @np.testing.dec.slow
+     def test_big_arrays(self):
+         L = (1 << 31) + 100000
+-        tmp = mktemp(suffix='.npz')
+         a = np.empty(L, dtype=np.uint8)
+-        np.savez(tmp, a=a)
+-        del a
+-        npfile = np.load(tmp)
+-        a = npfile['a']
+-        npfile.close()
+-        os.remove(tmp)
++        with tempdir() as tmpdir:
++            tmp = os.path.join(tmpdir, "file.npz")
++            np.savez(tmp, a=a)
++            del a
++            npfile = np.load(tmp)
++            a = npfile['a']
++            npfile.close()
+ 
+     def test_multiple_arrays(self):
+         a = np.array([[1, 2], [3, 4]], float)
diff --git a/dev-python/numpy/files/numpy-1.8.0-no-hardcode-blas.patch b/dev-python/numpy/files/numpy-1.8.0-no-hardcode-blas.patch
new file mode 100644
index 00000000000..eaf30dd8e13
--- /dev/null
+++ b/dev-python/numpy/files/numpy-1.8.0-no-hardcode-blas.patch
@@ -0,0 +1,25 @@
+patch to allow any blas (c or f77) to simulate the
+special treatment atlas libs have in numpy.
+2013: numpy.distutils still horrendous code
+
+--- numpy/distutils/system_info.py.orig	2013-11-25 19:54:45.760217851 -0800
++++ numpy/distutils/system_info.py	2013-11-25 20:00:26.575310888 -0800
+@@ -293,17 +293,7 @@
+       1 - display warning message
+       2 - raise error
+     """
+-    cl = {'atlas': atlas_info,  # use lapack_opt or blas_opt instead
+-          'atlas_threads': atlas_threads_info,                # ditto
+-          'atlas_blas': atlas_blas_info,
+-          'atlas_blas_threads': atlas_blas_threads_info,
+-          'lapack_atlas': lapack_atlas_info,  # use lapack_opt instead
+-          'lapack_atlas_threads': lapack_atlas_threads_info,  # ditto
+-          'mkl': mkl_info,
+-          'openblas': openblas_info,          # use blas_opt instead
+-          'lapack_mkl': lapack_mkl_info,      # use lapack_opt instead
+-          'blas_mkl': blas_mkl_info,          # use blas_opt instead
+-          'x11': x11_info,
++    cl = {'x11': x11_info,
+           'fft_opt': fft_opt_info,
+           'fftw': fftw_info,
+           'fftw2': fftw2_info,
diff --git a/dev-python/numpy/files/numpy-1.9.0-OO.patch b/dev-python/numpy/files/numpy-1.9.0-OO.patch
new file mode 100644
index 00000000000..f1ebc23e157
--- /dev/null
+++ b/dev-python/numpy/files/numpy-1.9.0-OO.patch
@@ -0,0 +1,91 @@
+From dc453917978e98dcdf3bbc106b080c80f0a1301e Mon Sep 17 00:00:00 2001
+From: Charles Harris <charlesr.harris@gmail.com>
+Date: Fri, 3 Oct 2014 20:03:31 -0600
+Subject: [PATCH] BUG: Make numpy import when run with Python flag '-OO'.
+
+This consists of checking for a docstring equal to None and skipping two
+tests that require docstrings.
+
+Closes #5148.
+---
+ numpy/lib/tests/test_function_base.py | 6 +++++-
+ numpy/lib/tests/test_utils.py         | 3 ++-
+ numpy/ma/extras.py                    | 8 +++++---
+ 3 files changed, 12 insertions(+), 5 deletions(-)
+
+diff --git a/numpy/lib/tests/test_function_base.py b/numpy/lib/tests/test_function_base.py
+index ee38b35..a3f8056 100644
+--- a/numpy/lib/tests/test_function_base.py
++++ b/numpy/lib/tests/test_function_base.py
+@@ -1,12 +1,14 @@
+ from __future__ import division, absolute_import, print_function
+ 
+ import warnings
++import sys
+ 
+ import numpy as np
+ from numpy.testing import (
+     run_module_suite, TestCase, assert_, assert_equal, assert_array_equal,
+     assert_almost_equal, assert_array_almost_equal, assert_raises,
+-    assert_allclose, assert_array_max_ulp, assert_warns, assert_raises_regex
++    assert_allclose, assert_array_max_ulp, assert_warns,
++    assert_raises_regex, dec
+     )
+ from numpy.random import rand
+ from numpy.lib import *
+@@ -2094,6 +2096,8 @@ def test_string_arg(self):
+ 
+ 
+ class TestAdd_newdoc(TestCase):
++
++    @dec.skipif(sys.flags.optimize == 2)
+     def test_add_doc(self):
+         # test np.add_newdoc
+         tgt = "Current flat index into the array."
+diff --git a/numpy/lib/tests/test_utils.py b/numpy/lib/tests/test_utils.py
+index fcb37f9..8fbd1c4 100644
+--- a/numpy/lib/tests/test_utils.py
++++ b/numpy/lib/tests/test_utils.py
+@@ -3,7 +3,7 @@
+ import sys
+ from numpy.core import arange
+ from numpy.testing import (
+-    run_module_suite, assert_, assert_equal
++    run_module_suite, assert_, assert_equal, dec
+     )
+ from numpy.lib import deprecate
+ import numpy.lib.utils as utils
+@@ -14,6 +14,7 @@
+     from StringIO import StringIO
+ 
+ 
++@dec.skipif(sys.flags.optimize == 2)
+ def test_lookfor():
+     out = StringIO()
+     utils.lookfor('eigenvalue', module='numpy', output=out,
+diff --git a/numpy/ma/extras.py b/numpy/ma/extras.py
+index 82a61a6..a993fd0 100644
+--- a/numpy/ma/extras.py
++++ b/numpy/ma/extras.py
+@@ -434,8 +434,10 @@ def apply_over_axes(func, a, axes):
+                 raise ValueError("function is not returning "
+                         "an array of the correct shape")
+     return val
+-apply_over_axes.__doc__ = np.apply_over_axes.__doc__[
+-    :np.apply_over_axes.__doc__.find('Notes')].rstrip() + \
++
++if apply_over_axes.__doc__ is not None:
++    apply_over_axes.__doc__ = np.apply_over_axes.__doc__[
++        :np.apply_over_axes.__doc__.find('Notes')].rstrip() + \
+     """
+ 
+     Examples
+@@ -462,7 +464,7 @@ def apply_over_axes(func, a, axes):
+     [[[46]
+       [--]
+       [124]]]
+-"""
++    """
+ 
+ 
+ def average(a, axis=None, weights=None, returned=False):
diff --git a/dev-python/numpy/files/numpy-1.9.0-no-hardcode-blas.patch b/dev-python/numpy/files/numpy-1.9.0-no-hardcode-blas.patch
new file mode 100644
index 00000000000..128ea1391dd
--- /dev/null
+++ b/dev-python/numpy/files/numpy-1.9.0-no-hardcode-blas.patch
@@ -0,0 +1,25 @@
+--- numpy/distutils/system_info.py      2014-09-07 08:57:47.000000000 +0000
++++ numpy/distutils/system_info.py      2014-10-19 17:57:12.099448481 +0000
+@@ -296,20 +296,7 @@
+       1 - display warning message
+       2 - raise error
+     """
+-    cl = {'atlas': atlas_info,  # use lapack_opt or blas_opt instead
+-          'atlas_threads': atlas_threads_info,                # ditto
+-          'atlas_blas': atlas_blas_info,
+-          'atlas_blas_threads': atlas_blas_threads_info,
+-          'lapack_atlas': lapack_atlas_info,  # use lapack_opt instead
+-          'lapack_atlas_threads': lapack_atlas_threads_info,  # ditto
+-          'mkl': mkl_info,
+-          # openblas which may or may not have embedded lapack
+-          'openblas': openblas_info,          # use blas_opt instead
+-          # openblas with embedded lapack
+-          'openblas_lapack': openblas_lapack_info, # use blas_opt instead
+-          'lapack_mkl': lapack_mkl_info,      # use lapack_opt instead
+-          'blas_mkl': blas_mkl_info,          # use blas_opt instead
+-          'x11': x11_info,
++    cl = {'x11': x11_info,
+           'fft_opt': fft_opt_info,
+           'fftw': fftw_info,
+           'fftw2': fftw2_info,
+
diff --git a/dev-python/numpy/files/numpy-1.9.2-no-hardcode-blas.patch b/dev-python/numpy/files/numpy-1.9.2-no-hardcode-blas.patch
new file mode 100644
index 00000000000..674dbfadbf0
--- /dev/null
+++ b/dev-python/numpy/files/numpy-1.9.2-no-hardcode-blas.patch
@@ -0,0 +1,35 @@
+ numpy/distutils/system_info.py | 21 +--------------------
+ 1 file changed, 1 insertion(+), 20 deletions(-)
+
+diff --git a/numpy/distutils/system_info.py b/numpy/distutils/system_info.py
+index a050430..d0878a5 100644
+--- a/numpy/distutils/system_info.py
++++ b/numpy/distutils/system_info.py
+@@ -303,26 +303,7 @@ def get_info(name, notfound_action=0):
+       1 - display warning message
+       2 - raise error
+     """
+-    cl = {'atlas': atlas_info,  # use lapack_opt or blas_opt instead
+-          'atlas_threads': atlas_threads_info,                # ditto
+-          'atlas_blas': atlas_blas_info,
+-          'atlas_blas_threads': atlas_blas_threads_info,
+-          'lapack_atlas': lapack_atlas_info,  # use lapack_opt instead
+-          'lapack_atlas_threads': lapack_atlas_threads_info,  # ditto
+-          'atlas_3_10': atlas_3_10_info,  # use lapack_opt or blas_opt instead
+-          'atlas_3_10_threads': atlas_3_10_threads_info,                # ditto
+-          'atlas_3_10_blas': atlas_3_10_blas_info,
+-          'atlas_3_10_blas_threads': atlas_3_10_blas_threads_info,
+-          'lapack_atlas_3_10': lapack_atlas_3_10_info,  # use lapack_opt instead
+-          'lapack_atlas_3_10_threads': lapack_atlas_3_10_threads_info,  # ditto
+-          'mkl': mkl_info,
+-          # openblas which may or may not have embedded lapack
+-          'openblas': openblas_info,          # use blas_opt instead
+-          # openblas with embedded lapack
+-          'openblas_lapack': openblas_lapack_info, # use blas_opt instead
+-          'lapack_mkl': lapack_mkl_info,      # use lapack_opt instead
+-          'blas_mkl': blas_mkl_info,          # use blas_opt instead
+-          'x11': x11_info,
++    cl = {'x11': x11_info,
+           'fft_opt': fft_opt_info,
+           'fftw': fftw_info,
+           'fftw2': fftw2_info,