proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

8 files changed, 219 insertions, 0 deletions

diff --git a/sci-chemistry/molscript/Manifest b/sci-chemistry/molscript/Manifest
new file mode 100644
index 00000000000..d1fa0a225a0
--- /dev/null
+++ b/sci-chemistry/molscript/Manifest
@@ -0,0 +1 @@
+DIST molscript-2.1.2.tar.gz 412497 SHA256 01252931f5a3542d5659ddaa4ebceaed2e75becb8ed150dfa14b59da9a63ca01 SHA512 0f82936da3123770c0fdb703094dbb5289cc39e9f9ffd034d8dba563f8d615788f67040d38158ac2f203b480c5838a7d8e71ca07bc5098181c1e3cfea26703a4 WHIRLPOOL 1588f4dd47117f8da797a8bf62a2eba071106b1faca4f79b06e3093fe76092cae54476f1a0be995e3637173561ae6003fded264dd6d3a424d235488f95085a75
diff --git a/sci-chemistry/molscript/files/2.1.2-ldflags.patch b/sci-chemistry/molscript/files/2.1.2-ldflags.patch
new file mode 100644
index 00000000000..8867bc10a6b
--- /dev/null
+++ b/sci-chemistry/molscript/files/2.1.2-ldflags.patch
@@ -0,0 +1,22 @@
+diff --git a/Makefile.complete b/Makefile.complete
+index 4ad535a..b565266 100644
+--- a/Makefile.complete
++++ b/Makefile.complete
+@@ -91,7 +91,7 @@ clean:
+ 
+ #------------------------------------------------------------
+ molscript: $(OBJ) clib/clib.a
+-	$(CC) -o molscript $(COPT) $(OBJ) $(YLIB) clib/clib.a \
++	$(CC) $(LDFLAGS) -o molscript $(COPT) $(OBJ) $(YLIB) clib/clib.a \
+               $(GLUTLINK) $(JPEGLINK) $(PNGLINK) $(GIFLINK) $(ZLIBLINK) -lm
+ 
+ molscript.tab.o: molscript.tab.c molscript.tab.h
+@@ -147,7 +147,7 @@ gif_img.o: gif_img.c gif_img.h global.h graphics.h image.h opengl.h
+ 
+ #------------------------------------------------------------
+ molauto: molauto.o clib/clib.a
+-	$(CC) -o molauto molauto.o clib/clib.a -lm
++	$(CC) $(LDFLAGS) -o molauto molauto.o clib/clib.a -lm
+ 
+ molauto.o: molauto.c
+ 
diff --git a/sci-chemistry/molscript/files/2.1.2-libpng15.patch b/sci-chemistry/molscript/files/2.1.2-libpng15.patch
new file mode 100644
index 00000000000..9ed1b85909e
--- /dev/null
+++ b/sci-chemistry/molscript/files/2.1.2-libpng15.patch
@@ -0,0 +1,19 @@
+--- png_img.c
++++ png_img.c
+@@ -18,6 +18,7 @@
+ 
+ #include <GL/gl.h>
+ 
++#include <zlib.h>
+ #include <png.h>
+ 
+ #include "clib/str_utils.h"
+@@ -69,7 +70,7 @@
+   info_ptr = png_create_info_struct (png_ptr);
+   if (info_ptr == NULL)
+     yyerror ("png_img: could not create PNG info structure");
+-  if (setjmp (png_ptr->jmpbuf)) yyerror ("png_img: could not setjmp");
++  if (setjmp (png_jmpbuf(png_ptr))) yyerror ("png_img: could not setjmp");
+ 
+   png_init_io (png_ptr, outfile);
+   png_set_compression_level (png_ptr, compression_level);
diff --git a/sci-chemistry/molscript/files/2.1.2-prll.patch b/sci-chemistry/molscript/files/2.1.2-prll.patch
new file mode 100644
index 00000000000..e4c972a1053
--- /dev/null
+++ b/sci-chemistry/molscript/files/2.1.2-prll.patch
@@ -0,0 +1,10 @@
+diff --git a/Makefile.complete b/Makefile.complete
+index 92ef20a..e3f68e3 100644
+--- a/Makefile.complete
++++ b/Makefile.complete
+@@ -153,4 +153,4 @@ molauto.o: molauto.c
+ 
+ #------------------------------------------------------------
+ clib/clib.a:
+-	cd clib; make clib.a CFLAGS="-I. $(CFLAGS)" OPENGLCLIBOBJ="$(OPENGLCLIBOBJ)"
++	$(MAKE) -C clib clib.a CFLAGS="-I. $(CFLAGS)" OPENGLCLIBOBJ="$(OPENGLCLIBOBJ)"
diff --git a/sci-chemistry/molscript/files/fix-makefile-shared.patch b/sci-chemistry/molscript/files/fix-makefile-shared.patch
new file mode 100644
index 00000000000..a9947a61a66
--- /dev/null
+++ b/sci-chemistry/molscript/files/fix-makefile-shared.patch
@@ -0,0 +1,62 @@
+diff -urN molscript-2.1.2.orig/Makefile.complete molscript-2.1.2/Makefile.complete
+--- molscript-2.1.2.orig/Makefile.complete	1998-11-25 01:04:39.000000000 -0800
++++ molscript-2.1.2/Makefile.complete	2005-11-21 12:28:06.000000000 -0800
+@@ -23,9 +23,9 @@
+ 
+ # OpenGL and GLUT for X (UNIX).
+ # Must be modified for Windows 95/NT. <---
+-GLUTDIR = $(FREEWAREDIR)/glut
+-GLUTLINK = $(GLUTDIR)/lib/glut/libglut.a -lGLU -lGL -lXmu -lXext -lX11
+-OPENGLFLAG = -DOPENGL_SUPPORT -I$(GLUTDIR)/include
++GLUTDIR = $(FREEWAREDIR)
++GLUTLINK = -lglut -lGLU -lGL -lXmu -lXext -lX11
++OPENGLFLAG = -DOPENGL_SUPPORT -I$(GLUTDIR)/include/GL
+ OPENGLOBJ = opengl.o
+ OPENGLCLIBOBJ = ogl_utils.o ogl_body.o ogl_bitmap_character.o
+ 
+@@ -35,25 +35,25 @@
+ 
+ # JPEG image file format; requires the JPEG library.
+ # Comment out these lines if the JPEG library is not available. <---
+-JPEGDIR = $(FREEWAREDIR)/jpeg
+-JPEGLINK = $(JPEGDIR)/libjpeg.a
+-JPEGFLAG = -DJPEG_SUPPORT -I$(JPEGDIR)
++JPEGDIR = $(FREEWAREDIR)
++JPEGLINK = -ljpeg
++JPEGFLAG = -DJPEG_SUPPORT
+ JPEGOBJ = jpeg_img.o
+ 
+ # PNG image file format; requires the PNG library and the zlib library.
+ # Comment out these lines if the PNG and zlib libraries are not available. <---
+-ZLIBDIR = $(FREEWAREDIR)/zlib
+-ZLIBLINK = $(ZLIBDIR)/libz.a
+-PNGDIR = $(FREEWAREDIR)/libpng
+-PNGLINK = $(PNGDIR)/libpng.a
+-PNGFLAG = -DPNG_SUPPORT -I$(PNGDIR) -I$(ZLIBDIR)
++ZLIBDIR = $(FREEWAREDIR)
++ZLIBLINK = -lz
++PNGDIR = $(FREEWAREDIR)
++PNGLINK = -lpng
++PNGFLAG = -DPNG_SUPPORT
+ PNGOBJ = png_img.o
+ 
+ # GIF image file format; requires the gd 1.3 library.
+ # Comment out these lines if the gd 1.3 library is not available. <---
+-GIFDIR = $(FREEWAREDIR)/gd
+-GIFLINK = $(GIFDIR)/libgd.a
+-GIFFLAG = -DGIF_SUPPORT -I$(GIFDIR)
++GIFDIR = $(FREEWAREDIR)
++GIFLINK = -lgd
++GIFFLAG = -DGIF_SUPPORT
+ GIFOBJ = gif_img.o
+ 
+ # SGI IRIX's C compiler.
+@@ -62,7 +62,7 @@
+ COPT = -O1
+ #  Correctness flags:
+ #CCHECK = -ansi -fullwarn -g -DSELECT_DEBUG
+-CCHECK = -ansi -fullwarn
++CCHECK = -ansi
+ #CCHECK = -ansi -fullwarn -DNDEBUG
+ 
+ # General cc compile flags.
diff --git a/sci-chemistry/molscript/files/glutbitmap.h b/sci-chemistry/molscript/files/glutbitmap.h
new file mode 100644
index 00000000000..9584bb129da
--- /dev/null
+++ b/sci-chemistry/molscript/files/glutbitmap.h
@@ -0,0 +1,32 @@
+#ifndef __glutbitmap_h__
+#define __glutbitmap_h__
+
+/* Copyright (c) Mark J. Kilgard, 1994, 1998. */
+
+/* This program is freely distributable without licensing fees 
+   and is provided without guarantee or warrantee expressed or 
+   implied. This program is -not- in the public domain. */
+
+#define GLUT_NO_LIB_PRAGMA  /* Avoid auto library linking when building
+                               the GLUT library itself. */
+#include <GL/glut.h>
+
+typedef struct {
+  const GLsizei width;
+  const GLsizei height;
+  const GLfloat xorig;
+  const GLfloat yorig;
+  const GLfloat advance;
+  const GLubyte *bitmap;
+} BitmapCharRec, *BitmapCharPtr;
+
+typedef struct {
+  const char *name;
+  const int num_chars;
+  const int first;
+  const BitmapCharRec * const *ch;
+} BitmapFontRec, *BitmapFontPtr;
+
+typedef void *GLUTbitmapFont;
+
+#endif /* __glutbitmap_h__ */
diff --git a/sci-chemistry/molscript/metadata.xml b/sci-chemistry/molscript/metadata.xml
new file mode 100644
index 00000000000..51fdedab1b3
--- /dev/null
+++ b/sci-chemistry/molscript/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-chemistry</herd>
+</pkgmetadata>
diff --git a/sci-chemistry/molscript/molscript-2.1.2-r2.ebuild b/sci-chemistry/molscript/molscript-2.1.2-r2.ebuild
new file mode 100644
index 00000000000..9440dce9820
--- /dev/null
+++ b/sci-chemistry/molscript/molscript-2.1.2-r2.ebuild
@@ -0,0 +1,68 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit eutils toolchain-funcs
+
+DESCRIPTION="Display molecular 3D structures, such as proteins, in both schematic and detailed representations"
+HOMEPAGE="http://www.avatar.se/molscript/"
+SRC_URI="${P}.tar.gz"
+
+LICENSE="glut molscript"
+SLOT="0"
+KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+DEPEND="
+	media-libs/freeglut
+	media-libs/gd:2=
+	media-libs/libpng:0=
+	virtual/jpeg:0=
+	|| (
+		x11-libs/libXmu
+		x11-libs/libXext
+		x11-libs/libX11
+		)"
+RDEPEND="${DEPEND}"
+
+RESTRICT="fetch"
+
+pkg_nofetch() {
+	elog "Please visit ${HOMEPAGE}"
+	elog "and get ${A}."
+	elog "Place it in ${DISTDIR}"
+}
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/fix-makefile-shared.patch \
+		"${FILESDIR}"/${PV}-ldflags.patch \
+		"${FILESDIR}"/${PV}-prll.patch \
+		"${FILESDIR}"/${PV}-libpng15.patch
+
+	# Provide glutbitmap.h, because freeglut doesn't have it
+	cp "${FILESDIR}"/glutbitmap.h "${S}"/clib/ || die
+
+	# Stop an incredibly hacky include
+	sed \
+		-e 's:<../lib/glut/glutbitmap.h>:"glutbitmap.h":g' \
+		-i "${S}"/clib/ogl_bitmap_character.c || die
+}
+
+src_compile() {
+	# Prefix of programs it links with
+	export FREEWAREDIR="${EPREFIX}/usr"
+
+	ln -s Makefile.complete Makefile || die
+
+	emake \
+		CC="$(tc-getCC)" \
+		COPT="${CFLAGS}"
+}
+
+src_install() {
+	dobin molscript molauto
+	dohtml "${S}"/doc/*.html
+}