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author | Robin H. Johnson <robbat2@gentoo.org> | 2015-08-08 13:49:04 -0700 |
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committer | Robin H. Johnson <robbat2@gentoo.org> | 2015-08-08 17:38:18 -0700 |
commit | 56bd759df1d0c750a065b8c845e93d5dfa6b549d (patch) | |
tree | 3f91093cdb475e565ae857f1c5a7fd339e2d781e /sci-chemistry/prekin | |
download | gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.tar.gz gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.tar.xz |
proj/gentoo: Initial commit
This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.
This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.
Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed
Diffstat (limited to 'sci-chemistry/prekin')
-rw-r--r-- | sci-chemistry/prekin/Manifest | 1 | ||||
-rw-r--r-- | sci-chemistry/prekin/files/6.51.081122-Makefile.patch | 41 | ||||
-rw-r--r-- | sci-chemistry/prekin/files/6.51.081122-overflow.patch | 28 | ||||
-rw-r--r-- | sci-chemistry/prekin/metadata.xml | 5 | ||||
-rw-r--r-- | sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 53 |
5 files changed, 128 insertions, 0 deletions
diff --git a/sci-chemistry/prekin/Manifest b/sci-chemistry/prekin/Manifest new file mode 100644 index 00000000000..58c94aa2baa --- /dev/null +++ b/sci-chemistry/prekin/Manifest @@ -0,0 +1 @@ +DIST prekin.6.51.081122.src.tgz 350756 SHA256 74a771cd8be000df13ac908f23a2e945e8bd3590884c6bc6ccff75804cc0fb7a diff --git a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch new file mode 100644 index 00000000000..5fd9d00d9b0 --- /dev/null +++ b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch @@ -0,0 +1,41 @@ +diff --git a/Makefile.linux b/Makefile.linux +index 65a021a..3daacd8 100755 +--- a/Makefile.linux ++++ b/Makefile.linux +@@ -1,15 +1,15 @@ + # +-CFLAGS = -I/usr/X11R6/include ++CFLAGS += -I/usr/X11R6/include + + ifeq ($(MAKECMDGOALS),debug) + CFLAGS = -g -I/usr/X11R6/include + endif + +-LIBS = -L/usr/lib -L/usr/X11R6/lib -lXmu -lXm -lXt -lSM -lICE -lXext -lX11 ++LIBS = -L/usr/GENTOOLIBDIR -L/usr/X11R6/lib -lXmu -lXm -lXt -lSM -lICE -lXext -lX11 + + ifeq ($(MAKECMDGOALS),nogui) +-CFLAGS = -D NOGUI -I/usr/X11R6/include +-LIBS = -L/usr/lib -L/usr/X11R6/lib -lXmu -lXt -lSM -lICE -lXext -lX11 ++CFLAGS += -D NOGUI -I/usr/X11R6/include ++LIBS = -L/usr/GENTOOLIBDIR -L/usr/X11R6/lib -lXmu -lXt -lSM -lICE -lXext -lX11 + endif + + FIN = -lm -pthread #for RH9.0, ok for RH7.3 & RH8.0 +@@ -26,13 +26,13 @@ OBJS = PKINANGL.o PKINCRTL.o PKINCSBS.o PKINCSUB.o PKINCOUT.o PKINMENU.o PKINROT + # Commands specific to clients created by this Makefile + + prekin: $(OBJS) +- cc -o prekin $(CFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN) ++ cc -o prekin $(CFLAGS) $(LDFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN) + + debug: $(OBJS) +- cc -o prekin $(CFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN) ++ cc -o prekin $(CFLAGS) $(LDFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN) + + nogui: $(OBJS) +- cc -o prekin $(CFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN) ++ cc -o prekin $(CFLAGS) $(LDFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN) + + clean: + rm *.o diff --git a/sci-chemistry/prekin/files/6.51.081122-overflow.patch b/sci-chemistry/prekin/files/6.51.081122-overflow.patch new file mode 100644 index 00000000000..27bc01d61a5 --- /dev/null +++ b/sci-chemistry/prekin/files/6.51.081122-overflow.patch @@ -0,0 +1,28 @@ +diff --git a/PKIN.h b/PKIN.h +index 6cb6670..c9c6b89 100755 +--- a/PKIN.h ++++ b/PKIN.h +@@ -533,8 +533,8 @@ EXTERN float xnext,ynext,znext,onext,Bnext,Uvalnext; + EXTERN char aspectstrnext[MAXaspects+3]; /*in parens: (XXXX)*/ + + /* possible overlap with earlier PREKIN variables */ +-EXTERN char word[256],texts[256],temps[256]; +-EXTERN char alertstr[256],alertstr2[256],alertstr3[256]; ++EXTERN char word[256],texts[256],temps[512]; ++EXTERN char alertstr[1024],alertstr2[256],alertstr3[256]; + EXTERN char oldstr[256],olderstr[256],newstr[256],InfoStr[256],MolNameStr[16]; + EXTERN char NameStr[256],OutfileStr[256],ScriptinStr[256],ShortNameStr[256]; + EXTERN char DirStr[256],PDBfileStr[256],helpoutStr[256]; /*040425 helpout*/ +diff --git a/PKINCOUT.c b/PKINCOUT.c +index af8eb24..a9f3a5f 100755 +--- a/PKINCOUT.c ++++ b/PKINCOUT.c +@@ -17,7 +17,7 @@ static float VRMLx=0,VRMLy=0,VRMLz=0; + void writeoutput() + { + char cntl[5]; /* 4 actual characters */ +- char kol[20],extra[256],aname[13]; ++ char kol[20],extra[256],aname[32]; + char chain[32],atoms[32],cpks[32],hygen[32],hbond[32]; + char subname[32],allstr[32]; + char mastername[32]; /*051128*/ diff --git a/sci-chemistry/prekin/metadata.xml b/sci-chemistry/prekin/metadata.xml new file mode 100644 index 00000000000..9ac9ffdb3a4 --- /dev/null +++ b/sci-chemistry/prekin/metadata.xml @@ -0,0 +1,5 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-chemistry</herd> +</pkgmetadata> diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild new file mode 100644 index 00000000000..9e0521c7dbc --- /dev/null +++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI="2" + +inherit toolchain-funcs eutils multilib + +MY_P=${PN}.${PV} + +DESCRIPTION="Prepares molecular kinemages (input files for Mage & KiNG) from PDB-format coordinate files" +HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php" +SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz" + +LICENSE="richardson" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" +IUSE="X" + +RDEPEND="x11-libs/libXext + x11-libs/libXmu + x11-libs/libX11 + x11-libs/libXt + X? ( >=x11-libs/motif-2.3:0 )" +DEPEND="${RDEPEND}" + +S=${WORKDIR}/${MY_P} + +src_prepare() { + epatch \ + "${FILESDIR}"/${PV}-Makefile.patch \ + "${FILESDIR}"/${PV}-overflow.patch + sed \ + -e 's:cc:$(CC):g' \ + -e "s:GENTOOLIBDIR:$(get_libdir):g" \ + "${S}"/Makefile.linux > Makefile || die +} + +src_compile() { + local mytarget + + if use X; then + mytarget="${PN}" + else + mytarget="nogui" + fi + + emake CC="$(tc-getCC)" ${mytarget} || die +} + +src_install() { + dobin "${S}"/prekin || die +} |