sci-libs/libbufr: Updated to latest release and removed old version

This fixes and/or obsoletes three open bugs on the old version
(bugs  370021, 478614, 513964) and adds lto USE flag to support
gold linker and -flto.  Also need to update package.mask.

Package-Manager: portage-2.2.26

4 files changed, 150 insertions, 52 deletions

diff --git a/sci-libs/libbufr/Manifest b/sci-libs/libbufr/Manifest
index da7f5f55941..e0171be9484 100644
--- a/sci-libs/libbufr/Manifest
+++ b/sci-libs/libbufr/Manifest
@@ -1 +1 @@
-DIST bufr_000387.tar.gz 3673816 SHA256 bb8c39f15b2d1661ef2d66de8ee1fcaaa195e8cb80023fc3112d3dd816c97745 SHA512 906129809c92b22bd0a73524048128e4a44335eaf8c978bb4d0c3c5f5be7d01ce530e3248eec681b4662840e4ed0270089ddc801dca8f022e7d6cfbc5e4c2967 WHIRLPOOL 43af1997618c1f73fbd8ee6120c4ad8329f648d1bbb09165b5f750e30cd5d49e246cabb4a6b82341e8408ffb042cbd58cb82ed29e0c234a27fa44a684b89c169
+DIST bufrdc_000405.tar.gz 11873311 SHA256 0c3ab33bdb3eea600c5af6f1e4064a000ec143f4c96a14b72ca09666ca3c3775 SHA512 3355d6bac54ef152f9feb13ae13f3c94f4e01a665a4b9bc7f85f0c98f9aa37411170668ba9adfb6b62c2fe906d0dff67b03a708cdf1acd21a0037e327c7c6169 WHIRLPOOL f97662c240e40086be2e2f7d33d446280576dd79ff119374d54d02af05bd51c9176a6592d965765baf549043ee80e8bb9e824e3149d4ce85599db1f5e3f42e10
diff --git a/sci-libs/libbufr/files/libbufr-000405-makefile.patch b/sci-libs/libbufr/files/libbufr-000405-makefile.patch
new file mode 100644
index 00000000000..08b30ded8d7
--- /dev/null
+++ b/sci-libs/libbufr/files/libbufr-000405-makefile.patch
@@ -0,0 +1,80 @@
+--- Makefile.orig	2016-01-04 13:09:58.661150785 -0800
++++ Makefile	2016-01-04 13:17:12.707621825 -0800
+@@ -1,7 +1,7 @@
+ #                                Makefile for libbufrex
+ #
+ R64 = R64
+-TARGETS = all clean
++TARGETS = all clean test
+ LIBRARY = libbufr$(R64).a
+ SHELL=/bin/sh
+ SUBDIRS = fortranC bufrdc pbio bufrtables examples
+@@ -11,12 +11,14 @@
+ 	( echo "*************************"; \
+ 	  echo "*** Make in $$name "; \
+ 	  echo "*************************"; \
+-	cd $$name ; make ; ) done
++	$(MAKE) -C $$name LIB=bufr ; ) done
++
++test :
+ 	./test.sh
+ 	tables_tools/check_tables.sh bufrtables
+ 
+ clean   :
+ 	@for name in $(SUBDIRS); do\
+-	( echo "*** Clean in $$name ***" ;cd $$name ; make clean ); \
++	( echo "*** Clean in $$name ***" ;$(MAKE) -C $$name clean ); \
+ 	done
+ 	rm -f $(LIBRARY)
+--- examples/Makefile.in.orig	2016-01-04 13:42:39.790648703 -0800
++++ examples/Makefile.in	2016-01-04 13:45:02.384967830 -0800
+@@ -16,19 +16,19 @@
+ #
+ #
+ TARGETS  = all clean
+-EXECS    = decode_bufr decode_bufr_image bufr_decode_all tdexp tdexp create_bufr
++EXECS    = decode_bufr decode_bufr_image bufr_decode_all bufr_compress tdexp create_bufr
+ #
+ #
+ all :$(EXECS)
+ 
+-decode_bufr: decode_bufr.o 
++decode_bufr: decode_bufr.o
+ 	$(FC) $(FFLAGS) -o $@ decode_bufr.o -L$(PLACE) -l$(LIB)$(R64)
+ 
+-bufr_decode_all: bufr_decode_all.o 
+-	$(FC) $(FFLAGS) -o $@ bufr_decode_all.o -L$(PLACE) -l$(LIB)$(R64) 
++bufr_decode_all: bufr_decode_all.o
++	$(FC) $(FFLAGS) -o $@ bufr_decode_all.o -L$(PLACE) -l$(LIB)$(R64)
+ 
+-bufr_compress: bufr_compress.o 
+-	$(FC) $(FFLAGS) -o $@ bufr_compress.o -L$(PLACE) -l$(LIB)$(R64) 
++bufr_compress: bufr_compress.o
++	$(FC) $(FFLAGS) -o $@ bufr_compress.o -L$(PLACE) -l$(LIB)$(R64)
+ 
+ bufr2crex   : bufr2crex.o
+ 	$(FC) $(FFLAGS) -o $@ bufr2crex.o -L$(PLACE) -l$(LIB)$(R64) -lcrex$(R64)
+@@ -48,4 +48,4 @@
+ clean   :
+ 	@for name in $(EXECS); do\
+ 	(rm -f $$name *.o ); \
+-	done 
++	done
+--- bufrtables/Makefile.orig	2016-01-04 14:03:47.292850644 -0800
++++ bufrtables/Makefile	2016-01-04 14:05:22.242500485 -0800
+@@ -25,11 +25,14 @@
+ OBJECTS      = $(OBJECTS.F) $(OBJECTS.c) 
+ #
+ #
+-all:  links 
++all:  pgms links
+ 
+ links: 
+ 	./clean.sh
+ 	./links.sh
++
++pgms: bufr2txt_tables bufr_split_tables txt2bufr_tables
++
+ bufr2txt_tables: bufr2txt_tables.f
+ 	$(FC) $(FFLAGS) -o bufr2txt_tables bufr2txt_tables.f $(LIBRARY)
+ bufr_split_tables: bufr_split_tables.f
diff --git a/sci-libs/libbufr/libbufr-000387.ebuild b/sci-libs/libbufr/libbufr-000405.ebuild
index 8d949a0f09e..96df106f0f0 100644
--- a/sci-libs/libbufr/libbufr-000387.ebuild
+++ b/sci-libs/libbufr/libbufr-000405.ebuild
@@ -1,27 +1,36 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
 EAPI=5
 
-inherit eutils fortran-2 flag-o-matic toolchain-funcs
+inherit eutils fortran-2 toolchain-funcs
 
-MY_P="${PN/lib/}_${PV}"
+MY_P="${PN/lib/}dc_${PV}"
 
 DESCRIPTION="ECMWF BUFR library - includes both C and Fortran example utilities"
-HOMEPAGE="http://www.ecmwf.int/products/data/software/bufr.html"
-SRC_URI="http://www.ecmwf.int/products/data/software/download/software_files/${MY_P}.tar.gz"
+HOMEPAGE="https://software.ecmwf.int/wiki/display/BUFR/BUFRDC+Home"
+SRC_URI="https://software.ecmwf.int/wiki/download/attachments/35752466/${MY_P}.tar.gz"
 
 LICENSE="LGPL-3"
 SLOT="0"
 KEYWORDS="~amd64 ~ppc ~ppc64 ~x86"
-IUSE="debug doc examples"
+# needs someone to test on these: ~alpha ~hppa ~ia64 ~sparc etc ...
+
+IUSE="debug doc examples lto"
+
+RDEPEND="
+	virtual/fortran
+	"
 
-RDEPEND=""
 DEPEND="sys-apps/findutils"
 
 S=${WORKDIR}/${MY_P}
 
+if use lto; then
+	RESTRICT="strip"
+fi
+
 pkg_setup() {
 	fortran-2_pkg_setup
 	case "$(tc-getFC)" in
@@ -40,7 +49,7 @@ pkg_setup() {
 	esac
 
 	elog "Note non-GNU compilers are not currently supported on non-x86"
-	elog "architectures. If you need it, please subit a patch..."
+	elog "architectures.  If you need it, please submit a patch..."
 
 	export target="linux"
 	export A64=""
@@ -63,43 +72,50 @@ pkg_setup() {
 
 src_prepare() {
 	update_configs
-	epatch "${FILESDIR}"/${PN}-makefile.patch
+	epatch "${FILESDIR}"/${P}-makefile.patch
 
 	local config="config/config.$target$CNAME$R64$A64"
 
 	if [[ "${ARCH}" == "ppc" ]] ; then
-		sed -i -e "s|= -mcpu=G4 -mtune=G4|= |" $config
+		sed -i -e "s|= -mcpu=G4 -mtune=G4|= |" ${config}
 	elif [[ "${ARCH}" == "ppc64" ]] ; then
-		sed -i -e "s|= -mcpu=G5 -mtune=G5|= |" $config
+		sed -i -e "s|= -mcpu=G5 -mtune=G5|= |" ${config}
+	else
+		cp ${config}.in ${config} || die "Error updating config!"
 	fi
 
-	sed -i -e "s:DEBUG = -O2:DEBUG = -g:g" $config
+	sed -i -e "s:DEBUG = -O2:DEBUG = -g:g" ${config}
+	use debug || sed -i -e "s:DEBUG = -g:DEBUG =:g" ${config}
 
-	# add local CFLAGS to and build flags
-	use debug || sed -i -e "s|\$(DEBUG)|${CFLAGS}|" $config
+	# add local CFLAGS to build flags
+	sed -i -e "s|\$(DEBUG)|${CFLAGS} \$(DEBUG) -fPIC|" \
+		-e 's|emos|/usr/share/bufrtables|g' ${config}
 
-	# add local LDFLAGS to link commands
+	# add local LDFLAGS to bins
 	sed -i \
-		-e "s|-o|${LDFLAGS} -o|" \
+		-e "s|-o|${LDFLAGS} -fPIC -o|" \
 		examples/Makefile \
 		bufrtables/Makefile
 }
 
 src_compile() {
+	export BUFR_TABLES="${S}"/bufrtables
 	EBUILD_ARCH="${ARCH}"
 	EBUILD_CFLAGS="${CFLAGS}"
 	unset ARCH CFLAGS
-	tc-export CC
-	append-flags -DTABLE_PATH="/usr/share/bufrtables"
 
-	# emake won't work with this fossil...
-	make ARCH=$target || die "make failed"
+	tc-export CC FC AR NM STRIP RANLIB
+	TC_FLAGS="CC=$CC FC=$FC AR=$AR RANLIB=$RANLIB"
+	ARFLAGS="rv"
 
-	pushd examples > /dev/null
-	make ARCH=$target decode_bufr bufr_decode \
-		create_bufr decode_bufr_image tdexp \
-		|| die "make examples failed"
-	popd > /dev/null
+	if use lto; then
+		PLUGIN_PATH="--plugin=$(gcc -print-prog-name=liblto_plugin.so)"
+		tc-ld-is-gold && ARFLAGS="rv ${PLUGIN_PATH}"
+	fi
+
+	# emake won't work with this fossil...
+	BUFRFLAGS="ARCH=$target R64=$R64 CNAME=$CNAME"
+	make $TC_FLAGS ARFLAGS="${ARFLAGS}" $BUFRFLAGS || die "make failed"
 
 	generate_files
 
@@ -108,9 +124,12 @@ src_compile() {
 }
 
 src_test() {
-	cd "${S}"/examples
-	BUFR_TABLES="${S}/bufrtables/" ./decode_bufr -i \
-		../data/ISMD01_OKPR.bufr < ../response_file
+	unset ARCH CFLAGS
+	BUFRFLAGS="ARCH=$target R64=$R64 CNAME=$CNAME"
+	make $BUFRFLAGS test || die "make test failed"
+
+	ARCH="${EBUILD_ARCH}"
+	CFLAGS="${EBUILD_CFLAGS}"
 }
 
 src_install() {
@@ -118,24 +137,24 @@ src_install() {
 	dolib.a libbufr$R64.a
 
 	dosbin bufrtables/{bufr2txt_tables,bufr_split_tables,txt2bufr_tables}
-	dobin examples/{create_bufr,decode_bufr,decode_bufr_image,tdexp}
+	dobin examples/{bufr_decode_all,create_bufr,decode_bufr,decode_bufr_image,tdexp}
 
 	keepdir /usr/share/bufrtables
 	insinto /usr/share/bufrtables
-	doins bufrtables/*000*
+	doins -r bufrtables/{B,C,D}*.*
 
 	# files generated above
 	doenvd 20${PN}
 
 	dodoc README
 	if use doc ; then
-		insinto /usr/share/doc/${P}
+		insinto /usr/share/doc/${PF}
 		doins doc/*.pdf
 	fi
 
 	if use examples ; then
 		newdoc examples/README README.examples
-		insinto /usr/share/doc/${P}/examples
+		insinto /usr/share/doc/${PF}/examples
 		doins examples/{*.F,*.c,Makefile}
 	fi
 }
@@ -161,30 +180,20 @@ generate_files() {
 	## Do not remove blank lines from the response file
 	cat <<-EOF > 20${PN}
 	BUFR_TABLES="/usr/share/bufrtables"
-	CONFIG_PROTECT="/usr/share/bufrtables"
-	EOF
-
-	cat <<-EOF > response_file
-	N
-	N
-	N
-	1
-
-	N
 	EOF
 }
 
 update_configs() {
-	find . -type f | xargs chmod -x
-	chmod +x bufrtables/links.sh
+	find . -type f -name \*.distinct -o -name \*.f -o -name \*.in \
+		 | xargs chmod -x
 	cp options/options_linux options/options_ppc
 	cp options/options_linux options/options_ppc_G5
 	cp pbio/sources.linux pbio/sources.ppc
 	cp pbio/sources.linux pbio/sources.ppc_G5
 	pushd config > /dev/null
-		cp config.ppc config.ppc_gfortran
-		cp config.ppcR64 config.ppc_gfortranR64
-		cp config.ppc_G5 config.ppc_G5_gfortran
-		cp config.ppcR64_G5 config.ppc_G5_gfortranR64
+		cp config.ppc_gfortran.in config.ppc_gfortran
+		cp config.ppc_gfortranR64.in config.ppc_gfortranR64
+		cp config.ppc_gfortran_G5.in config.ppc_gfortran_G5
+		cp config.ppc_gfortranR64_G5.in config.ppc_gfortranR64_G5
 	popd > /dev/null
 }
diff --git a/sci-libs/libbufr/metadata.xml b/sci-libs/libbufr/metadata.xml
index 69b4f2ff140..aae3622eeab 100644
--- a/sci-libs/libbufr/metadata.xml
+++ b/sci-libs/libbufr/metadata.xml
@@ -2,7 +2,16 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<herd>sci-geosciences</herd>
-	<longdescription>This is mainly just an open source BUFR library from ECMWF
- that comes with a few example toolss (some of which are built and installed).
-</longdescription>
+	<maintainer>
+		<email>nerdboy@gentoo.org</email>
+		<name>Steve Arnold</name>
+	</maintainer>
+	<longdescription lang="en">
+		This is mainly just an open source BUFR library from ECMWF that comes with a few example tools (some of which are built and installed).
+	</longdescription>
+	<use>
+		<flag name="lto">
+			Use gold linker and -flto (requires existing env setup)
+		</flag>
+	</use>
 </pkgmetadata>