diff options
Diffstat (limited to 'sci-chemistry/phaser/phaser-2.1.4.ebuild')
-rw-r--r-- | sci-chemistry/phaser/phaser-2.1.4.ebuild | 115 |
1 files changed, 0 insertions, 115 deletions
diff --git a/sci-chemistry/phaser/phaser-2.1.4.ebuild b/sci-chemistry/phaser/phaser-2.1.4.ebuild deleted file mode 100644 index 86fa57f5260..00000000000 --- a/sci-chemistry/phaser/phaser-2.1.4.ebuild +++ /dev/null @@ -1,115 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit eutils flag-o-matic python-single-r1 toolchain-funcs - -CCP4VER="6.1.13" - -DESCRIPTION="A program for phasing macromolecular crystal structures" -HOMEPAGE="http://www-structmed.cimr.cam.ac.uk/phaser" -SRC_URI="ftp://ftp.ccp4.ac.uk/ccp4/${CCP4VER}/ccp4-${CCP4VER}-${PN}-cctbx-src.tar.gz" - -LICENSE="|| ( phaser phaser-com ccp4 )" -SLOT="0" -#KEYWORDS="~amd64 ~x86" -KEYWORDS="" -IUSE="openmp" - -RDEPEND="" -DEPEND="${RDEPEND} - app-shells/tcsh" - -S="${WORKDIR}"/ccp4-${CCP4VER} - -src_prepare() { - epatch \ - "${FILESDIR}"/phaser-2.1.4-chmod.patch \ - "${FILESDIR}"/phaser-2.1.4-ldflags.patch - - use openmp && append-flags -fopenmp - - for i in ${CXXFLAGS}; do - OPTS="${OPTS} \"${i}\"," - done - - OPTS=${OPTS%,} - - sed -i \ - -e "s:opts = \[.*\]$:opts = \[${OPTS}\]:g" \ - "${S}"/lib/cctbx/cctbx_sources/libtbx/SConscript || die - - for i in ${LDFLAGS}; do - OPTSLD="${OPTSLD} \"${i}\"," - done - - sed -i \ - -e "s:env_etc.shlinkflags .* \"-shared\":env_etc.shlinkflags = \[ ${OPTSLD} \"-shared\"\]:g" \ - -e "s:\[\"-static:\[${OPTSLD} \"-static:g" \ - "${S}"/lib/cctbx/cctbx_sources/libtbx/SConscript || die - -} - -src_configure() { - local compiler - local mtype - local mversion - local nproc - - # Valid compilers are win32_cl, sunos_CC, unix_gcc, unix_ecc, - # unix_icc, unix_icpc, tru64_cxx, hp_ux11_aCC, irix_CC, - # darwin_c++, darwin_gcc. The build systems seems to prepend - # unix_ all by itself. Can this be derived from $(tc-getCC)? - compiler=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)') - - # Breaks cross compilation. - mtype=$(src/${PN}/bin/machine_type) - mversion=$(src/${PN}/bin/machine_version) - - einfo "Creating build directory" - mkdir build - cd build - ln -sf "${S}/lib/cctbx/cctbx_sources/scons" scons - ln -sf "${S}/lib/cctbx/cctbx_sources/libtbx" libtbx - - einfo "Configuring phaser components" - $(PYTHON) "libtbx/configure.py" \ - --build=release \ - --compiler=${compiler} \ - --repository="${S}"/src/${PN}/source \ - --repository="${S}"/lib/cctbx/cctbx_sources \ - --static_libraries \ - ccp4io="${S}" \ - mmtbx \ - phaser || die "configure.py failed" -} - -src_compile() { - nproc=`echo "-j1 ${MAKEOPTS}" \ - | sed -e "s/.*\(-j\s*\|--jobs=\)\([0-9]\+\).*/\2/"` - - cd build - einfo "Setting up build environment" - source setpaths.sh - - einfo "Compiling phaser components" - libtbx.scons -j ${nproc} || die "libtbx.scons failed" -} - -src_install() { - dobin build/exe/phaser || die - - cat >> "${T}"/53${PN} <<- EOF - PHASER="${EPREFIX}/usr/bin" - PHASER_ENVIRONMENT="1" - PHASER_MTYPE="${mtype}" - PHASER_MVERSION="${mversion}" - PHASER_VERSION="${PV}" - EOF - - doenvd "${T}"/53${PN} || die -} |