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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
PYTHON_COMPAT=( python2_7 )
inherit cmake-utils flag-o-matic python-single-r1
DESCRIPTION="C++ Sequence Analysis Library"
HOMEPAGE="http://www.seqan.de/"
SRC_URI="http://packages.${PN}.de/${PN}-src/${PN}-src-${PV}.tar.gz"
SLOT="0"
LICENSE="BSD GPL-3"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="cpu_flags_x86_sse4_1"
REQUIRED_USE="${PYTHON_REQUIRED_USE} cpu_flags_x86_sse4_1"
RDEPEND="${PYTHON_DEPS}
sci-biology/samtools"
DEPEND="${RDEPEND}"
PATCHES=(
"${FILESDIR}"/${P}-shared.patch
"${FILESDIR}"/${P}-include.patch
)
src_prepare() {
append-cppflags -msse4.1
rm -f \
util/cmake/FindZLIB.cmake \
|| die
touch extras/apps/seqan_flexbar/README || die
sed \
-e "s:share/doc:share/doc/${PF}:g" \
-i docs/CMakeLists.txt util/cmake/SeqAnBuildSystem.cmake || die
cmake-utils_src_prepare
}
src_configure() {
local mycmakeargs=(
-DBoost_NO_BOOST_CMAKE=ON
)
cmake-utils_src_configure
}
src_install() {
mkdir -p "${BUILD_DIR}"/docs/html || die
cmake-utils_src_install
chmod 755 "${ED}"/usr/bin/*sh || die
mv "${ED}"/usr/bin/{,seqan-}join || die
}
pkg_postinst() {
elog "Due to filecollision the 'join' binary has been renamed to seqan-join"
}
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