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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
PYTHON_COMPAT=( python2_7 )
inherit distutils-r1 python-r1
DESCRIPTION="Assign protein nuclei solely on the basis of pseudocontact shifts (PCS)"
HOMEPAGE="http://protchem.lic.leidenuniv.nl/software/parassign/registration"
SRC_URI="PARAssign_Linux_x64_86.tgz"
RESTRICT="fetch"
SLOT="0"
LICENSE="Apache-2.0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE=""
REQUIRED_USE="${PYTHON_REQUIRED_USE}"
RDEPEND="${PYTHON_DEPS}"
DEPEND="${RDEPEND}
dev-python/cython[${PYTHON_USEDEP}]
dev-python/matplotlib[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/scientificpython[${PYTHON_USEDEP}]
sci-biology/biopython[${PYTHON_USEDEP}]
sci-libs/scipy[${PYTHON_USEDEP}]"
S="${WORKDIR}"/PARAssign_Linux_x64_86/
src_prepare() {
sed \
-e '1i#!/usr/bin/python2' \
-i code/*py || die
if use x86; then
sed \
-e "s:munkres64:munkres:g" \
-i modules/setup.py || die
elif use amd64; then
sed \
-e "s:munkres:munkres64:g" \
-i code/*py || die
fi
cd modules || die
rm *o *c || die
distutils-r1_src_prepare
}
src_compile() {
cd modules || die
distutils-r1_src_compile
}
src_install() {
python_foreach_impl python_doscript code/* || die
dodoc PARAssign_Tutorial.pdf README
cd modules || die
distutils-r1_src_install
}
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