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Include README.rst; not README
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Windows was having issues finding the entry_points and some other
implementation ideas were having package including conflicts.
Update MANIFEST.in, there are no longer any root `py` files to include.
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Setuptools allows me to specify, clearly, script entry_points so that I
don't have to have a manual step to do this.
Removed line to copy README.markdown to README and instead added it to the
MANIFEST template
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